| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,488,890 – 8,489,001 |
| Length | 111 |
| Max. P | 0.770448 |
| Location | 8,488,890 – 8,489,001 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 88.56 |
| Shannon entropy | 0.19445 |
| G+C content | 0.39903 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -17.56 |
| Energy contribution | -18.32 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8488890 111 - 21146708 CAGAAAGAAGCAGCGGUCAACUG--AAAUGAAAAGCC--AAAAAAACGUUUUACAAAAUCAGCGGAUUCCAUCCGCCAUCAAAGUGAAAAGUUUUAACGACCGCAAAACGAAUAU ............((((((.....--...((......)--)..(((((.((((((.......((((((...)))))).......)))))).)))))...))))))........... ( -25.94, z-score = -3.57, R) >droEre2.scaffold_4845 5278772 108 + 22589142 UAAACAGA---AGCGGUCAACUG--AAAUGAAAAGCCAAAAAAAAAGGUUUUACAAAGUCAGCGGAUUCC--CCGCCAUCAAAGUGAAAAGUUUUUACGACCGCAAAACGAAUAU ........---.((((((...((--(..((.((((((.........)))))).))...)))((((.....--)))).......(((((.....)))))))))))........... ( -27.20, z-score = -4.01, R) >droYak2.chr2R 12683840 110 + 21139217 UAAACAGA---AGCGGUCAACUGCUGAAUGAUGAAAAGCCAAAAAACGUUUUACAAAGUCAGCGGAUUCC--CCGCCAUCAAAGUGAAAAGUUUUAACGACCGCAAAGCGAAUAU ........---.((((((....(((...........)))...(((((.((((((.......((((.....--)))).......)))))).)))))...))))))........... ( -26.84, z-score = -2.89, R) >droSec1.super_1 6035138 105 - 14215200 CAGAAAGA---AGCGGUCAACUG--AAAUGAAAAGCC---AAAAAGCGUUUUACAAAGUCAGCGGAUUCC--CCGGCAUCAAAGUGAAAAGUUUUAACGAGCGCAAAACGAAUAU ........---.(((.((..(((--(..((.((((((---.....).))))).))...))))(((.....--))).......................)).)))........... ( -17.80, z-score = 0.13, R) >droSim1.chr2R 6973579 105 - 19596830 CAGAAAGA---AGCGGUCAACUG--AAAUGAAAAGCC---AAAAAGCGUUUUACAAAGUCAGCGGAUUCC--CCGGCAUCAAAGUGAAAAGUUUUAACGAGCGCAAAACGAAUAU ........---.(((.((..(((--(..((.((((((---.....).))))).))...))))(((.....--))).......................)).)))........... ( -17.80, z-score = 0.13, R) >consensus CAGAAAGA___AGCGGUCAACUG__AAAUGAAAAGCC___AAAAAACGUUUUACAAAGUCAGCGGAUUCC__CCGCCAUCAAAGUGAAAAGUUUUAACGACCGCAAAACGAAUAU ............((((((..(........)............(((((.((((((.......((((.......)))).......)))))).)))))...))))))........... (-17.56 = -18.32 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:21 2011