| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,443,519 – 8,443,570 |
| Length | 51 |
| Max. P | 0.894698 |
| Location | 8,443,519 – 8,443,570 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.47059 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8443519 51 + 21146708 CAAAGUGGAAAUGCAAAUAUUUGCGUGCCUCCGGCGACCCCUUUGCAAUUU (((((.((..((((((....))))))(((...)))..)).)))))...... ( -13.30, z-score = -1.53, R) >droSec1.super_1 5990072 51 + 14215200 CAAAGUGGAAAUGCAAAUAUUUGCGUGCCUCCGGCGACCCCUUUGCAAUUU (((((.((..((((((....))))))(((...)))..)).)))))...... ( -13.30, z-score = -1.53, R) >droYak2.chr2R 12638844 51 - 21139217 CAAAGUGGAAAUGCAAAUAUUUGCGUGCCUCCGGCGACCCCUUUGCAAUUU (((((.((..((((((....))))))(((...)))..)).)))))...... ( -13.30, z-score = -1.53, R) >droEre2.scaffold_4845 5234050 51 - 22589142 CAAAGUGGAAAUGCAAAUAUUUGCGUGCCUCCGGCGACCCCUUUGCAAUUU (((((.((..((((((....))))))(((...)))..)).)))))...... ( -13.30, z-score = -1.53, R) >consensus CAAAGUGGAAAUGCAAAUAUUUGCGUGCCUCCGGCGACCCCUUUGCAAUUU (((((.((..((((((....))))))(((...)))..)).)))))...... (-13.30 = -13.30 + -0.00)
| Location | 8,443,519 – 8,443,570 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.47059 |
| Mean single sequence MFE | -12.30 |
| Consensus MFE | -12.30 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.88 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8443519 51 - 21146708 AAAUUGCAAAGGGGUCGCCGGAGGCACGCAAAUAUUUGCAUUUCCACUUUG ......((((((((..(((...)))..((((....))))...))).))))) ( -12.30, z-score = -0.88, R) >droSec1.super_1 5990072 51 - 14215200 AAAUUGCAAAGGGGUCGCCGGAGGCACGCAAAUAUUUGCAUUUCCACUUUG ......((((((((..(((...)))..((((....))))...))).))))) ( -12.30, z-score = -0.88, R) >droYak2.chr2R 12638844 51 + 21139217 AAAUUGCAAAGGGGUCGCCGGAGGCACGCAAAUAUUUGCAUUUCCACUUUG ......((((((((..(((...)))..((((....))))...))).))))) ( -12.30, z-score = -0.88, R) >droEre2.scaffold_4845 5234050 51 + 22589142 AAAUUGCAAAGGGGUCGCCGGAGGCACGCAAAUAUUUGCAUUUCCACUUUG ......((((((((..(((...)))..((((....))))...))).))))) ( -12.30, z-score = -0.88, R) >consensus AAAUUGCAAAGGGGUCGCCGGAGGCACGCAAAUAUUUGCAUUUCCACUUUG ......((((((((..(((...)))..((((....))))...))).))))) (-12.30 = -12.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:20 2011