| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,440,712 – 8,440,829 |
| Length | 117 |
| Max. P | 0.564360 |
| Location | 8,440,712 – 8,440,829 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 66.73 |
| Shannon entropy | 0.56176 |
| G+C content | 0.44871 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -10.58 |
| Energy contribution | -11.02 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8440712 117 + 21146708 UACCGAUAGCCAGUCGGUAGUCUCUCCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUUUUCACUCAAAACGACGGCAAACAGCUACAAAGUGCAUCAAAUUCAUUUUUAAAUUU (((((((.....)))))))..........(((((((((((((....))))))))......................(((.....)))...)))))...................... ( -24.90, z-score = -1.44, R) >droSim1.chr2R 6923910 111 + 19596830 UAGCGAUAGCCA-----UAGCCUCUCCCUCGCCUUCUGCGUCCACGGAUGCGGAUCACUUUUUCACUCAAAGCGAUGGCAAG-AGCUACAAAGUGCAUCAAAUUCAUUUUGAAAUUU ..((....))..-----((((((..((.((((..((((((((....)))))))).................)))).))..))-.))))(((((((.(......))))))))...... ( -28.11, z-score = -1.36, R) >droYak2.chr2R 12636075 97 - 21139217 ------UACCAA-----UACCCUCUCCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUUUG-ACUCAAA-CAGCCUCA-------ACAAAGUGCAUCAAAUUCAUUUUGAAAUUU ------......-----.................((((((((....)))))))).((((((((-(..(...-..)..)))-------..))))))..(((((.....)))))..... ( -18.20, z-score = -2.09, R) >droEre2.scaffold_4845 5231265 97 - 22589142 ------UACCGA-----UACGCUCUCCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUUUG-ACUCAAA-CAGCAUCA-------ACAAAGUGCAUCAAAUUCAUUUUGAAAUUU ------......-----...((........))..((((((((....)))))))).((((((((-(..(...-..)..)))-------..))))))..(((((.....)))))..... ( -18.80, z-score = -1.30, R) >droAna3.scaffold_13266 13038739 95 + 19884421 ------UACCAAGAGGCCAAAUGGACUCUAGCUGGCAGUGGACUAGGCUG-AGUUGAGUCUCUCCCUC----CCAUCUC---------CAUAGU--AUUUGGAUCACUUUUGACUAU ------...((((((.(((((((....(((..(((..((((...(((..(-((......)))..))).----))))..)---------))))))--))))))....))))))..... ( -25.10, z-score = 0.17, R) >consensus ______UACCAA_____UACCCUCUCCCUCGCUUUCUGCGUCCACGGAUGCGGAUCACUUUUUCACUCAAA_CAACCUCA_______ACAAAGUGCAUCAAAUUCAUUUUGAAAUUU ..................................((((((((....))))))))..................................(((((((.........)))))))...... (-10.58 = -11.02 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:18 2011