| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,427,500 – 8,427,597 |
| Length | 97 |
| Max. P | 0.786763 |
| Location | 8,427,500 – 8,427,597 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 88.42 |
| Shannon entropy | 0.19348 |
| G+C content | 0.54025 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -29.30 |
| Energy contribution | -28.94 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8427500 97 - 21146708 ------CACACACGCA------GUUGCUAUUGCUGUUGUACUUGCUAUUGCAAAAGUGGACAACAGUAUCUGGCGCCCUGCCCACGAUGGCAUGGAGCUGCACUGACCG ------.......(((------(((((((.(((((((((((((((....)))..)))..)))))))))..)))).((.((((......)))).))))))))........ ( -35.10, z-score = -1.98, R) >droSim1.chr2R 6910582 97 - 19596830 ------CACACACGCA------UUUGCUAUUGCUGUUGUAGUUGCUCUUGCAAAACUGGACAACAGUAUCUGGCGCCCUGCCCACGAUGGCAUGGAGCUGCACUGACCG ------.......(((------...((((.(((((((((..((((....))))......)))))))))..))))((((((((......)))).)).)))))........ ( -32.70, z-score = -1.75, R) >droSec1.super_1 5973987 97 - 14215200 ------CACACACGCA------UUUGCUAUUGCUGUUGUAGUUGCUCUUGCAAAACUGGACAACAGUAUCUGGCGCCCUGCCCACGAUGGUAUGGAGCUGCACUGACCG ------.......(((------...((((.(((((((((..((((....))))......)))))))))..))))((((((((......)))).)).)))))........ ( -30.70, z-score = -1.33, R) >droYak2.chr2R 12622573 109 + 21139217 CACACACGCAGAUGCCAUUGCCGUUGCUGUUGCUGUUGUACUUGCUCUUGCAAAACUGGACAACAGUAUCUGGUGCCCUGCCCACGAUGGCAUGGCGCUGCACUGACCG .......((((.((((((.(((((((....(((((((((..((((....))))......)))))))))..(((.((...))))))))))))))))))))))........ ( -42.70, z-score = -2.96, R) >droEre2.scaffold_4845 5217738 103 + 22589142 ------CACACACGCAGUUGCUGUUGCUAUUGCUGUUGUACUCGCUCUUGCAAAACUGGACAACAGUAUCUGGUGCCCUGCCCACGAUGGCAUGGAGCUGCACUGACCG ------.......((((((.(...(((((((((((((((....((....))........))))))))...(((.((...))))).))))))).).))))))........ ( -31.30, z-score = -0.29, R) >consensus ______CACACACGCA______GUUGCUAUUGCUGUUGUACUUGCUCUUGCAAAACUGGACAACAGUAUCUGGCGCCCUGCCCACGAUGGCAUGGAGCUGCACUGACCG .............((..........((((.(((((((((..((((....))))......)))))))))..))))((((((((......)))).)).)).))........ (-29.30 = -28.94 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:16 2011