| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,427,066 – 8,427,168 |
| Length | 102 |
| Max. P | 0.983545 |
| Location | 8,427,066 – 8,427,168 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 73.44 |
| Shannon entropy | 0.37479 |
| G+C content | 0.32373 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -13.98 |
| Energy contribution | -14.87 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.983545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8427066 102 - 21146708 GGACAUAGUGAUGGUCUUCGUUCGGUGACAGCAAGUGCCCAUUAAAUCAUAUAUCUUAUGAAUAAUUCAUAAGAGUAUAUCUUCAUCUAAGUUCAAAUCAAA ((((.(((((((((.(((.(((.(....)))))))...))))))....(((((((((((((.....)))))))).)))))......))).))))........ ( -23.90, z-score = -2.84, R) >droSec1.super_1 5973559 101 - 14215200 GGACAUAGAGAUGGUCAUAGUUUGGUGACAGGAAGUGACCAAAGAAUCAUAUAUCAUAUGAAUAAUUU-UAUGAAUACACCUUUGAGUAUUUUUGCAUCUGA ((((((((((.(((((((..((((....))))..))))))).....((((((...))))))....)))-))))(((((........)))))......))).. ( -24.40, z-score = -1.86, R) >droSim1.chr2R 6910160 90 - 19596830 AGACAUAGAGAUGGUCAUCGUUUGGUGACAGGAAGUGACCAAAGAAUCAUAUAUCAUAUGAAUAA-UU-CAUAA----------GAGUAUUUAUUCAUCUAA .....((((..(((((((..((((....))))..)))))))..((((......((.(((((....-.)-)))).----------))......)))).)))). ( -24.60, z-score = -3.43, R) >consensus GGACAUAGAGAUGGUCAUCGUUUGGUGACAGGAAGUGACCAAAGAAUCAUAUAUCAUAUGAAUAAUUU_UAUGA_UA_A_CUU_GAGUAUUUUUACAUCUAA ........((((((((((..((((....))))..))))))......(((((.....)))))...................................)))).. (-13.98 = -14.87 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:15 2011