| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,406,610 – 8,406,660 |
| Length | 50 |
| Max. P | 0.852777 |
| Location | 8,406,610 – 8,406,660 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 86.31 |
| Shannon entropy | 0.19228 |
| G+C content | 0.58095 |
| Mean single sequence MFE | -18.30 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.87 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8406610 50 + 21146708 CCCCUACGUGGCAGCUCCUGUUGCCUAUAGUUGGCAACGCGA------GUUCACCC .......((((..((((.(((((((.......))))))).))------)))))).. ( -18.40, z-score = -2.97, R) >droSim1.chr2R_random 2241385 56 + 2996586 UCCCUAAGUGGCAGCCUCUGUUGCCUAUAGUUGGCAACGCGAACGCGAGUUCACCC ......((.((...)).))((((((.......))))))..((((....)))).... ( -16.80, z-score = -1.54, R) >droSec1.super_1 5953272 56 + 14215200 UCCCUAGGUGGCAGCCUCUGUUGCCUAUAGUUGGCAACGCGAACGCGAGUUCACUC ....((((..((((...))))..))))..((.(....)))((((....)))).... ( -19.70, z-score = -1.87, R) >consensus UCCCUAAGUGGCAGCCUCUGUUGCCUAUAGUUGGCAACGCGAACGCGAGUUCACCC ...(((...((((((....))))))..)))..(....)..((((....)))).... (-14.20 = -14.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:11 2011