| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,383,950 – 8,384,048 |
| Length | 98 |
| Max. P | 0.534499 |
| Location | 8,383,950 – 8,384,048 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.31 |
| Shannon entropy | 0.39871 |
| G+C content | 0.35082 |
| Mean single sequence MFE | -19.66 |
| Consensus MFE | -12.42 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8383950 98 - 21146708 GCAAACUAACUUGUGGCAGUAAACUAUUAGCUGGAAUGACAGCCACAUUUCGUAUGAAUUAUCUAUAUGAAAUGAUUGCGGUAUCCUUUAAAAAUACU--------------- ((((......)))).(((((.........((((......))))..(((((((((((.......))))))))))))))))(((((.........)))))--------------- ( -21.70, z-score = -2.29, R) >droEre2.scaffold_4845 5182359 109 + 22589142 GCAAACCCACUUGUGGGACUAAACUAUUAGCUAGAAUGAUAACCGUAUUUCGUGUGAAUUAUAUAUAUGAACUGAUUGCGGAAUCCUUGCAAAG----UACUAAACUGAUGGG .....((((....))))......(((((((.(((........(((((.((((((((.......)))))))).....)))))......(((...)----)))))..))))))). ( -21.40, z-score = -1.13, R) >droYak2.chr2R 12586670 113 + 21139217 GCAAAUUUACUUUUGGGACUAAACUAUUAGCUACAGUGAUAACCGCACUUCGUGUGAAUUAUAUAUAUGAACUGAUUGCCGAAUCCUUUCUAAGUCCUUACGAAAUUGACGGG (..(((((......((((((.........((..((((......(((((...)))))..((((....))))))))...)).(((....)))..))))))....)))))..)... ( -17.80, z-score = 0.06, R) >droSec1.super_1 5931854 93 - 14215200 GCAAACUCACUUGUGGCAGUAAACUAUUAGC-----UAUUAGCCACAUUUCGUUUGAAUUAUCUAUAUGAAAUGAUUGCGAUAUCCUUUCAAAAUACU--------------- .(((((.....((((((((((..........-----)))).))))))....)))))...........(((((.(((......))).))))).......--------------- ( -17.90, z-score = -2.07, R) >droSim1.chr2R 6861467 98 - 19596830 GCAAACUCACUUGUGGCAGUAAACUAUUAGCUGGAAUGAUAGCCACAUUUCGUAUGAAUUAUCUAUAUGAAAUGAUUGCGGUAUCCUUUCAAAAUACU--------------- ((((........(((((.((...(((.....)))....)).)))))((((((((((.......))))))))))..))))(((((.........)))))--------------- ( -19.50, z-score = -1.13, R) >consensus GCAAACUCACUUGUGGCAGUAAACUAUUAGCUAGAAUGAUAGCCACAUUUCGUAUGAAUUAUCUAUAUGAAAUGAUUGCGGUAUCCUUUCAAAAUACU_______________ ((((.....((.((((.......)))).))...............(((((((((((.......))))))))))).)))).................................. (-12.42 = -12.90 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:08 2011