| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,383,812 – 8,383,905 |
| Length | 93 |
| Max. P | 0.820243 |
| Location | 8,383,812 – 8,383,905 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.77 |
| Shannon entropy | 0.35746 |
| G+C content | 0.41682 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -14.88 |
| Energy contribution | -14.80 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8383812 93 + 21146708 -----CAAAUAGCUGAGCAUUCCCCUCAGUCAUUUGGCAAUUAAUUAAUUA--GAGUUGCCAAGAAAGUUCGCCCAAAACAAUUGGCUUCGCAGCUAACG -----......((((((.......))))))..((((((((((.........--.))))))))))..((((((.((((.....))))...)).)))).... ( -20.90, z-score = -1.76, R) >droAna3.scaffold_13266 494708 94 + 19884421 CCAACUUGGUAACUAAGCAGCCCCACAUGUGAUUUGGCAAUUAAUUAAUUACCAGGCCUGCAAGAAAGUUUCGAGUGGAAAACACUCAUUGCAA------ ....((((((((.(((...(((.((....))....)))......))).))))))))..(((((((.....))(((((.....))))).))))).------ ( -23.30, z-score = -1.39, R) >droEre2.scaffold_4845 5182219 93 - 22589142 -----CAAAUAGCUGAGCAUUCCCCGCAGUCAUUUGGCAAUUAAUUAAUUA--GAGUUGCCAAGAAAGUUCGCCCAAAACAAUUGGCUUUGCAACUAACA -----......((.((((.......((......(((((((((.........--.)))))))))((....)))).(((.....))))))).))........ ( -17.60, z-score = -0.34, R) >droYak2.chr2R 12586530 93 - 21139217 -----CAAAUAACUGAGCACUCCCCUCAGUCAUUUGGCAAUUAAUUAAUUU--GAGUUGCCAAGAAAGUUCGCCCAAAACAAUUGGCUUCGCAACUAACG -----......((((((.......))))))..((((((((((.........--.))))))))))..((((((.((((.....))))...)).)))).... ( -20.60, z-score = -2.38, R) >droSec1.super_1 5931716 93 + 14215200 -----CAAAUAGCUGAGCAUUCCCCUCAGUCAUUUGGCAAUUAAUUAAUUA--GAGUUGCCAAGAAAGUUCGCCCGAAACAAUUGGCUUCGCAGCUAACG -----......((((((.......))))))..((((((((((.........--.))))))))))...(((.((.((((.(....)..))))..)).))). ( -21.50, z-score = -1.69, R) >droSim1.chr2R 6861329 93 + 19596830 -----CAAAUAGCUGAGCAUUCCCCUCAGUCAUUUGGCAAUUAAUUAAUUA--GAGUUGCCAAGAAAGUUCGCCCAAAACAAUUGGCCUCGCAGCUAACG -----......((((((.......))))))..((((((((((.........--.))))))))))..((((((.((((.....))))...)).)))).... ( -20.90, z-score = -1.86, R) >consensus _____CAAAUAGCUGAGCAUUCCCCUCAGUCAUUUGGCAAUUAAUUAAUUA__GAGUUGCCAAGAAAGUUCGCCCAAAACAAUUGGCUUCGCAACUAACG ...........((((((.......))))))..((((((((((............))))))))))..((((((.((((.....))))...)).)))).... (-14.88 = -14.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:08 2011