| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,381,298 – 8,381,402 |
| Length | 104 |
| Max. P | 0.862826 |
| Location | 8,381,298 – 8,381,402 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 61.01 |
| Shannon entropy | 0.73885 |
| G+C content | 0.46751 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -8.44 |
| Energy contribution | -9.42 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8381298 104 + 21146708 GUGCCGCCUGCGAUUGCAUGCACCUGGCAUGGGAGUUCCUAUACCUA-UACCUCUAUACCUAUGUAUACCCUACAUACACACCUAUAGUUAUAGUAAUCGCAGGA ......(((((((((((........((.(((((....))))).))((-((...(((((....(((((.......)))))....))))).))))))))))))))). ( -31.80, z-score = -2.56, R) >droAna3.scaffold_13266 492240 82 + 19884421 GUGCCUUGUGCGAUUGUGUGCAGCUGGCAUAGG-GAAGGUAUAUUGUACAUG------UAUGGGUGCCCAAAAGCUGAUCCCCCCGAGU---------------- ((((((((..((....))..)))..))))).((-(...((((((.....)))------)))(((.((......))....))))))....---------------- ( -21.90, z-score = 0.64, R) >droYak2.chr2R 12584065 88 - 21139217 ---GUGCCUGCGAUUGUAUGCACCUGGCAUGGGUGUCCCUAUACCUA-------------UACCUACACUAUACCU-UAUACCUAUAGUUAUAGUAAAAGCAGGA ---...(((((.((((((.......((.((((((((....)))))))-------------).))...((((((...-......))))))))))))....))))). ( -23.40, z-score = -0.80, R) >droEre2.scaffold_4845 5179767 82 - 22589142 ---GUGCCUGCGAUUGUAUGCACCUGGCAUGGGUGUAUCUACACCUA-------------UACCUAUGCC-------UAUACCUAUAGUUAUAGUAAUAGCAGGA ---...((((((((((((.......((((((((((((........))-------------))))))))))-------......))))))).((....))))))). ( -29.52, z-score = -2.38, R) >droSec1.super_1 5929273 92 + 14215200 ---------GUGCCUGCAUGCACCUGGCAUGGGAGUUCCCAUACCUACUACA--CCUCUAUACCUAUACCCUACUUCCAC--CUAUAGUUAUAGUAAUCGCAGGA ---------...(((((........((.(((((....))))).)).......--...(((((.(((((............--.))))).))))).....))))). ( -23.92, z-score = -1.90, R) >droSim1.chr2R 6858970 100 + 19596830 ---GUGCCUGCGAUUGCAUGCACCUGGCAUGGGAGUUCCCAUACCUACUAUAGCUCUCUAUACCUAUACCCUACAUCCAC--CUAUAGUUAUAGUAAUCGCAGGA ---...(((((((((((........((.(((((....))))).)).(((((((...........................--)))))))....))))))))))). ( -32.53, z-score = -3.40, R) >consensus ___GUGCCUGCGAUUGCAUGCACCUGGCAUGGGAGUUCCUAUACCUA_UA________UAUACCUAUACCCUACAU_CACACCUAUAGUUAUAGUAAUCGCAGGA ......(((((...((....))...((.(((((....))))).))......................................................))))). ( -8.44 = -9.42 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:07 2011