| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,379,344 – 8,379,456 |
| Length | 112 |
| Max. P | 0.936036 |
| Location | 8,379,344 – 8,379,456 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.35 |
| Shannon entropy | 0.37191 |
| G+C content | 0.52062 |
| Mean single sequence MFE | -35.62 |
| Consensus MFE | -27.03 |
| Energy contribution | -27.62 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8379344 112 + 21146708 UCUUUUUAAAGAAACUUUGCAUAGACGAAGAACGAGGGCGAGACCUUGCCACC-AAUGGAGCAUGGUACCUGGUGCCGGGUAUCGUGACGCUUUCCCUCAUGAUGGGUGAUUU ((((....))))..(((((......)))))...(((((.(((.(((((....)-)).)).((((((((((((....))))))))))).).))).))))).............. ( -33.70, z-score = -1.13, R) >droYak2.chr2R 12582148 106 - 21139217 CCUUU------AAAGUUUGCAUAGACGAACUACGAGGGCGAGACCUUGCCAGC-AAUGGAGCACGGUACCUGGUGCCGGGUAUCGUGACGCUUUCCCUUGUGGUGGGGGAUUU (((((------..((((((......))))))..))))).((..(((..(((.(-((.(((((((((((((((....))))))))))).....)))).))))))..)))..)). ( -44.80, z-score = -3.31, R) >droEre2.scaffold_4845 5177843 106 - 22589142 CCUUU------AAACUUUGCAUAGACGAAGAACGAGGGCGAGACCUUGCCACC-AAUGGAGCAUGGUACCUGGUGCCGGGUAUCGUGUCGCUUUCCCUCGUAAUGGGUGAUUU ((...------...(((((......))))).(((((((.(((.(((((....)-)).)).((((((((((((....))))))))))))..))).)))))))...))....... ( -38.50, z-score = -2.35, R) >droSec1.super_1 5927287 112 + 14215200 CCUUUUUAAAGAAACUUUGCAUAGCCAAAGAACGAGGGCGAGACCUUGCCACC-GAUGGAGCAUGGUACCUGGCGCCGGGUAUCGUGACGCUUUCCCUCGUGAUGGGUGAUAU .......................(((.....(((((((.(((......(((..-..))).((((((((((((....))))))))))).).))).)))))))....)))..... ( -37.70, z-score = -1.66, R) >droSim1.chr2R 6856739 113 + 19596830 CCUUUUUAAAGAAACUUUGCAUAGCCGAAGAACGAGGGCGAGACCUUGCCACCCGAUGGAGCAUGGUACCUGGCGCCGGGUAUCGUGACGCUUUCCCUCGUGAUGGGUGAUUU .......................(((.(...(((((((.(((......(((.....))).((((((((((((....))))))))))).).))).)))))))..).)))..... ( -37.50, z-score = -1.31, R) >droAna3.scaffold_13266 490619 88 + 19884421 -CUUUU-----AAACUUUGCAUAGACGCGGAACGAGGGCGAGACCUUGCCACC---AGAACGUUGCUACAUGGUGCCAGGUACCGUGACAUAUGAAU---------------- -.....-----..........(((..(((....(..(((((....)))))..)---....)))..)))((((((((...))))))))..........---------------- ( -21.50, z-score = -0.59, R) >consensus CCUUUU_____AAACUUUGCAUAGACGAAGAACGAGGGCGAGACCUUGCCACC_AAUGGAGCAUGGUACCUGGUGCCGGGUAUCGUGACGCUUUCCCUCGUGAUGGGUGAUUU ..............(((((......))))).((((((((((....)))))...........(((((((((((....))))))))))).........)))))............ (-27.03 = -27.62 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:06 2011