| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,366,912 – 8,367,014 |
| Length | 102 |
| Max. P | 0.695970 |
| Location | 8,366,912 – 8,367,014 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 93.92 |
| Shannon entropy | 0.10641 |
| G+C content | 0.50196 |
| Mean single sequence MFE | -33.22 |
| Consensus MFE | -30.10 |
| Energy contribution | -30.38 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8366912 102 - 21146708 CAUCUCAUCUCGGCACGGCUCACGCACUGAGCUUUAGCCACUUUAAAUGCCGGAGGCUAAUGAGUUGGCCAAAAGCUUUGUCAGUGUCAAGUUGGGAGAUAU ..(((((.((.(((((.((....))((.(((((((.(((((((.....(((...)))....))).))))..))))))).))..))))).)).)))))..... ( -33.40, z-score = -1.70, R) >droEre2.scaffold_4845 5167122 102 + 22589142 CAUCUCAUCUCGGCCCGACUCACGCACAGUGCUUUAGCCGCUUUAACAGCCGGAGGCUAAUGAGUUGGCCAGAAGCUUUGUCAGUGUCAAGUUGGUAGAUAU ......((((....((((((.((((((((.(((((.(((((((....((((...))))...))).))))..))))).))))..))))..)))))).)))).. ( -30.00, z-score = -0.65, R) >droYak2.chr2R 12571381 102 + 21139217 CAUCUCAUCUGGGCACGACUCACGCACAGAGCUUUAGCCGCUUUAACAGCCGGAGGCUAAUGAGUGGGCCAGGAGCUUUGUCAGUGUCAAGUUGGGAGAUAU ..(((((.((.((((((.....)(.((((((((((.(((((((....((((...))))...)))).)))..))))))))))).))))).)).)))))..... ( -35.00, z-score = -1.44, R) >droSec1.super_1 5916660 102 - 14215200 CAUCUCAUCUGGGCACGACUCACGCACAGAGCUUUAGCCACUUUAACUGCCGGAGGCUAAUGAUUUGGCCAGAAGCUUUGUCAGUGUCAAGUUGGGAGAUAU ..(((((.((.((((((.....)(.((((((((((.((((..(((...(((...)))...)))..))))..))))))))))).))))).)).)))))..... ( -34.20, z-score = -2.09, R) >droSim1.chr2R 6845375 102 - 19596830 CAUCUCAUCUGGGCACGACUCACGCACAGAGCUUUAGCCACUUUAACUGCUGGAGGCUAAUGAGUUGGCCAGAAGCUUUGUCAGUGUCAAGUUGGGAGAUAU ..(((((.((.((((((.....)(.((((((((((.(((((((.....((.....))....))).))))..))))))))))).))))).)).)))))..... ( -33.50, z-score = -1.39, R) >consensus CAUCUCAUCUGGGCACGACUCACGCACAGAGCUUUAGCCACUUUAACUGCCGGAGGCUAAUGAGUUGGCCAGAAGCUUUGUCAGUGUCAAGUUGGGAGAUAU ..(((((.((.((((((.....)(.((((((((((.(((((((.....(((...)))....)))).)))..))))))))))).))))).)).)))))..... (-30.10 = -30.38 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:05 2011