| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,364,508 – 8,364,611 |
| Length | 103 |
| Max. P | 0.704784 |
| Location | 8,364,508 – 8,364,611 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.04 |
| Shannon entropy | 0.37078 |
| G+C content | 0.39997 |
| Mean single sequence MFE | -27.89 |
| Consensus MFE | -14.03 |
| Energy contribution | -16.82 |
| Covariance contribution | 2.80 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8364508 103 - 21146708 -----CGAAAUGAAACAAAA-AUA-CUUCCCUUUUCAUUUGCAAUUUUCACACAAC-UUUUGCAAC--GAAGCUGCGGGCAUUUUAUUGCCUGUUGCAAGGCAGGUGAGUUGG -----..........(((..-.((-(((.(((((((..((((((............-..)))))).--)))((.(((((((......))))))).)))))).)))))..))). ( -27.74, z-score = -1.74, R) >droSim1.chr2R 6842694 103 - 19596830 -----CGAAAUGAAACAAAA-AUA-UUUCCCUUUUCAUUUGCAAUUUUCACACAAC-UUUGGCAAC--GAAGCUGCGGGCAUUUUAUUGCCUGUUGCAGGGCAGGUGAGUUGG -----.((((((........-.))-))))((..(((((((((..............-((((....)--)))((.(((((((......))))))).))...)))))))))..)) ( -32.50, z-score = -2.83, R) >droSec1.super_1 5914002 103 - 14215200 -----CGAAAUGAAACAAAA-AUA-UUUCCCUUUUCAUUUGCAAUUUUCACACAAC-UUUGGCAAC--GAAGCUGCGGGCAUUUUAUUGCCUGUUGCAGGGCAGGUGAGUUGG -----.((((((........-.))-))))((..(((((((((..............-((((....)--)))((.(((((((......))))))).))...)))))))))..)) ( -32.50, z-score = -2.83, R) >droYak2.chr2R 12568640 103 + 21139217 -----CGGCAUGAAACAAAA-AUA-CUUCCCUUUUCAUUUGCAAUUUUCACACAAG-UUCGGCAAC--AGAGCUGCGGGCAUUUUAUUGCCUGUUGCAGAGCAGGUGAGUUGG -----...............-...-....((..(((((((((............((-((((....)--.)))))(((((((......)))))))......)))))))))..)) ( -30.20, z-score = -1.67, R) >droEre2.scaffold_4845 5164500 103 + 22589142 -----CGGAAUGAAACAAAA-AUA-CUUCCCUUUUCAUUUGCAAUUUUCACACAAG-UUUGGCAAC--AGAGCUGCGGGCAUUUUAUUGCCUGUUGCAGGGCAGGUGAGUGGG -----...............-...-...(((..(((((((((..............-((((....)--)))((.(((((((......))))))).))...))))))))).))) ( -33.40, z-score = -2.38, R) >droAna3.scaffold_13266 473626 108 - 19884421 -----AAAAAGAAAACAAAAUAUAUUUUUCCUUUUCAUUUGCAAUUUUCAUACAAGUUUUGGUAGCAGAGAGCUGCGGGCAUUUUAUUGCCUGUUGCAUGGCAGGUGAGGCGG -----........................((.((((((((((...((((.(((........)))...))))((.(((((((......))))))).))...)))))))))).)) ( -29.50, z-score = -1.73, R) >dp4.chr3 17302749 95 - 19779522 GAAUACGAAAUAAAACAACA-AUA-UUUUCCUUUUCAUUUGCAAUUUUCCGACAAGUUUUUCAAACA-GAGACUGCGGGCAUUUUAAUGCCAGUUGCA--------------- (((...((((..........-...-.))))...)))...(((((((...((...(((((((.....)-)))))).))(((((....))))))))))))--------------- ( -18.64, z-score = -2.08, R) >droPer1.super_31 447004 95 + 935084 GAAUACGAAAUAAAACAACA-AUA-UUUUCCUUUUCAUUUGCAAUUUUCCGACAAGUUUUUCGAACA-GAGACUGCGGGCAUUUUAAUGCCAGUUGCA--------------- (((...((((..........-...-.))))...)))...(((((((...((...(((((((.....)-)))))).))(((((....))))))))))))--------------- ( -18.64, z-score = -1.82, R) >consensus _____CGAAAUGAAACAAAA_AUA_UUUCCCUUUUCAUUUGCAAUUUUCACACAAG_UUUGGCAAC__GAAGCUGCGGGCAUUUUAUUGCCUGUUGCAGGGCAGGUGAGUUGG .............................((..(((((((((...............(((........)))((.(((((((......))))))).))...)))))))))..)) (-14.03 = -16.82 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:04 2011