| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,337,649 – 8,337,754 |
| Length | 105 |
| Max. P | 0.667201 |
| Location | 8,337,649 – 8,337,754 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.21 |
| Shannon entropy | 0.49565 |
| G+C content | 0.52086 |
| Mean single sequence MFE | -30.28 |
| Consensus MFE | -20.85 |
| Energy contribution | -20.66 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8337649 105 + 21146708 ------------GAAUCCGAAUCUGAAUCCCGACGCGGAGCUCAAUGAGGCUGCCGAUCAUCUAACGUCGGCCAUUUCGCACAUGGUCAGCGACCUGAACGCAGGUAAAUCGUUGGA ------------.................(((((((((((((......)))).))).........(((.((((((.......)))))).)))(((((....)))))....)))))). ( -31.60, z-score = -0.18, R) >droGri2.scaffold_15245 15583502 104 + 18325388 -------------AACGCUAAUCCGACAGCCGAUGCCGAACUGAACGAAACCGCCGACAACAUAACGUCGGCCAUUUCGACGAUGGUCAGCGAUCUGAAUGCAGGUAAAUCGCAGGU -------------..((((...(((.(((.((....))..)))..(((((..((((((........))))))..)))))....)))..))))(((((....)))))........... ( -28.90, z-score = -0.63, R) >droVir3.scaffold_10324 1252152 105 - 1288806 ------------GAAUGCCAAUCCCAAUGCCGACGCGGAGCUGAACGCGACUGCCGACAACAUAACGUCGGCCAUUUCGACAAUGGUCAGCGAUCUGAAUGCAGGUAAAUCGCGGGA ------------.........((((...((((.((((........))))...((((((........))))))...........))))..((((((((....)))....))))))))) ( -33.20, z-score = -0.74, R) >droMoj3.scaffold_6496 25007237 105 - 26866924 ------------GAAUGCCAAUCCAAUUGCCGAUGCGGAGCUCAACGAAGCUGCCGACAACAUAACAUCGGCCAUUUCAACGAUGGUCAGCGAUCUAAAUGCAGGUAAUUCUGAGCA ------------...(((((....((((((((((((((((((......)))).))).........))))(((((((.....))))))).(((.......))).))))))).)).))) ( -27.20, z-score = -0.53, R) >droWil1.scaffold_180745 757723 90 + 2843958 ---------------------------AGCCGAUGCCGAGCUAAAUGAAGCUGCCGAUACUAUAACAUCGGCCAUAUCGAAUAUGGUCAGUGAUUUGAAUGCAGGUAAAUCGUUGGA ---------------------------..((((((...((((......))))(((........(((((.((((((((...)))))))).))).))........)))....)))))). ( -21.99, z-score = -0.34, R) >droPer1.super_4 5872401 88 - 7162766 -----------------------------CCGAUGCCGAGCUCAAUGAAGCCGCCGAUAACAUAACCUCGGCCAUAUCCCAUAUGGUCAGCGACCUGAAUGCAGGUAAAUCGUUGGA -----------------------------((((((.((.(((......))))).)(((...........((((((((...))))))))....(((((....)))))..)))))))). ( -24.00, z-score = -0.94, R) >dp4.chr3 14029517 88 + 19779522 -----------------------------CCGAUGCCGAGCUCAAUGAAGCCGCCGAUAACAUAACCUCGGCCAUAUCCCAUAUGGUCAGCGACCUGAAUGCAGGUAAAUCGUUGGA -----------------------------((((((.((.(((......))))).)(((...........((((((((...))))))))....(((((....)))))..)))))))). ( -24.00, z-score = -0.94, R) >droEre2.scaffold_4845 5137490 111 - 22589142 ------GAAUCAGAAUCCGAAUCUGAAUCCCGACGCGGAGCUCAAUGAGGCUGCCGAUCACCUAACGUCGGCCAUUUCCCACAUGGUCAGCGACCUGAACGCAGGUAAAUCGUUGGA ------((.(((((.......))))).))(((((((((((((......)))).))).........(((.((((((.......)))))).)))(((((....)))))....)))))). ( -36.50, z-score = -1.64, R) >droSec1.super_1 5887192 117 + 14215200 GAAUCAGAAUCCGAAUUCGCAUCUGAAUCCCGACGCGGAGCUCAAUGAGGCUGCCGAUCAUCUAACGUCGGCCAUUUCGCACAUGGUCAGCGACCUGAACGCAGGUAAAUCGUUGGA ((.(((((...((....))..))))).))(((((((((((((......)))).))).........(((.((((((.......)))))).)))(((((....)))))....)))))). ( -38.00, z-score = -1.05, R) >droSim1.chr2R 6814966 117 + 19596830 GAAUCAGAAUCCGAAUCCGCAUCUGAAUCCCGACGCGGAGCUCAAUGAGGCUGCCGAUCAUCUAACGUCGGCCAUUUCGCACAUGGUCAGCGACCUGAACGCAGGUAAAUCGUUGGA ((.(((((...((....))..))))).))(((((((((((((......)))).))).........(((.((((((.......)))))).)))(((((....)))))....)))))). ( -37.40, z-score = -0.84, R) >consensus ____________GAAU_CGAAUCUGAAUCCCGACGCGGAGCUCAAUGAAGCUGCCGAUAACAUAACGUCGGCCAUUUCGCACAUGGUCAGCGACCUGAAUGCAGGUAAAUCGUUGGA .............................((..(((.((.(.....((((..((((((........))))))..))))......).)).)))(((((....)))))........)). (-20.85 = -20.66 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:01 2011