| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,334,760 – 8,334,880 |
| Length | 120 |
| Max. P | 0.576236 |
| Location | 8,334,760 – 8,334,880 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 64.51 |
| Shannon entropy | 0.60117 |
| G+C content | 0.33479 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -10.00 |
| Energy contribution | -10.88 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8334760 120 + 21146708 UCUAAAAUCAGGAUGGAGUGUCGUCGCCCAUCGAUUGCUCAGUUUUCAAGAAAAUGAAUCAUAAGUUUAUGAGCUUAUGGUUUAUAAAAGAUUAUUUAAAUACAAUGGUCUAUUUUAAGG (((........(((((.(((....))))))))((..((...))..)).)))..((((((((((((((....))))))))))))))...((((((((.......))))))))......... ( -28.30, z-score = -2.47, R) >droEre2.scaffold_4845 5134568 109 - 22589142 ---UCUUAAGUCACAAUGGAGUGUUGCAAAUCGAUUGCUCAGCUUGCAGGAAAAUAAAUCAUAACCUUUUGAGCAUAUGGUUUAUAAAAGAUAGGCGCAGUACA--------UCUUAAGG ---.((((((.....(((.(.(((.((..(((..((((.......))))....((((((((((..((....))..))))))))))....)))..))))).).))--------))))))). ( -21.50, z-score = -0.15, R) >droYak2.chr2R 12538495 116 - 21139217 ---UGUAAAACCAGGAGGGAGUGUCGCCAAUCGCUUGCUCAGUUUCCAAGAAAUAUAAUCAUAAGUUUAUGGGCUUAUGGUUUAUAAAGGAUAAUUUAAGUACAAUGAU-UAUCUUCAGG ---....((((...(((.(((((........))))).))).))))((......((((((((((((((....))))))))).))))).(((((((((..........)))-))))))..)) ( -26.50, z-score = -1.51, R) >droSim1.chr2R 6812097 96 + 19596830 -----------------------UCUAAAAUC-AUGAUGGAGUUUCCAAGAAAAUGAAUCAUAAGUUUAUGAGCCUAUGGUUCAUAAAAGAUAAUUGAAAAACAUUGGCCUAUCUUAAGG -----------------------.........-..(((((.(...((((.....(.(((.((...((((((((((...))))))))))..)).))).)......))))))))))...... ( -16.70, z-score = -0.62, R) >consensus ___U_UAAAA_CA_GA_GGAGUGUCGCAAAUCGAUUGCUCAGUUUCCAAGAAAAUGAAUCAUAAGUUUAUGAGCUUAUGGUUUAUAAAAGAUAAUUGAAAUACAAUGGU_UAUCUUAAGG .....................................................((((((((((((((....))))))))))))))................................... (-10.00 = -10.88 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:18:00 2011