| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,334,353 – 8,334,517 |
| Length | 164 |
| Max. P | 0.547864 |
| Location | 8,334,353 – 8,334,517 |
|---|---|
| Length | 164 |
| Sequences | 8 |
| Columns | 183 |
| Reading direction | forward |
| Mean pairwise identity | 68.27 |
| Shannon entropy | 0.59080 |
| G+C content | 0.48679 |
| Mean single sequence MFE | -55.98 |
| Consensus MFE | -12.88 |
| Energy contribution | -12.80 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.66 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8334353 164 + 21146708 -UUUUUUUCGCUCCCGCUCUCGU-------GAAAGAUGGAAAAUCAAUUGC--GAAAACUUGGGUACGAGAAGCGUGAUGUGACAGCAACUUCUGA-AGUUGUCGUCACCC---UUCUGG----CGUGGAGUUAUGCAUCAAGGAUAUGAUGAGGAUGCUCCAGCCACCGCGGCGGAAGGGG- -..(((((((..((((...(((.-------.(..(((.....)))..)..)--)).....))))..))))))).......((((.((((((.....-)))))).))))(((---(((((.----(((((.......(((((......))))).((.....)).....))))).)))))))).- ( -59.40, z-score = -2.24, R) >droSim1.chr2R 6811700 155 + 19596830 -UUUUUUUCGCUCCCGCUCUCGU-------GAAAGAUGGAAAAUCAAUUGC--GAAAACUUGGGUACGAGAAGCGUGAUGUGACAGCAACUUCUGA-AGUUGUCGUCACCC---UUCUGG----CGUGGAGUUAUGCAUCAAGGAUAUGAUGAGGAUGCUCCC---------GCGGAAGGGG- -..(((((((..((((...(((.-------.(..(((.....)))..)..)--)).....))))..))))))).......((((.((((((.....-)))))).))))(((---(((((.----((.(((((....(((((......))))).....))))))---------))))))))).- ( -57.70, z-score = -3.15, R) >droSec1.super_1 5883929 163 + 14215200 --UUUUUUCGCUCCCGCGUUCGU-------GAAAGAUGGAAAAUCAAUUGC--GAAAACUUGGGUACGAGAAGCGUGAUGUGACAGCAACUUCUAA-AGUUGUCGUCACCC---UUCUGG----CGUGGAGUUAUGCAUCAAUGAUAUGAUGAGGAUGCACCCUUUGCCGCGGCGGAAGGGG- --.(((((((..((((..((((.-------.(..(((.....)))..)..)--)))....))))..))))))).......((((.((((((.....-)))))).))))(((---(((((.----(((((.....((((((.((......))...)))))).......))))).)))))))).- ( -62.10, z-score = -3.55, R) >droYak2.chr2R 12538099 155 - 21139217 --UUUUUUCGCUCC--CUCUCGU-------GAAAGAUGGAAAAUCAAUUGC--GAAAACUUGGGAACGAGAAGCGUGAUGCGACAGCAACUUCUGA-AGUUGUCGACACCC---UUCUAG----CGUGGAGUUAUGCUUCAAGGAUAUGAUGAGUAUGCUCCAC------CGGUGGAAGGGG- --.(((((((.(((--(..(((.-------.(..(((.....)))..)..)--))......)))).))))))).....(((((((((..(....).-.))))))).))(((---(((((.----((((((((.((((((((......)))..))))))))))).------)).)))))))).- ( -58.70, z-score = -4.00, R) >droEre2.scaffold_4845 5134171 155 - 22589142 --UUUUUUCGCUCC--CUCUCGU-------GAAAGAUGGAAAAUCAAUUGC--GAAAACUUGGGAACGAGAAGCGUGAUGUGACAGCAACUUCUGA-AGUUGUCGACACCC---UGCCAC----CGUGGAGUUAUGCUUCAAGGAUAUGAUGAGUAUGCUCCAC------CGGUGGAACGGG- --.(((((((.(((--(..(((.-------.(..(((.....)))..)..)--))......)))).))))))).(((...(((((((..(....).-.))))))).)))((---((((((----((((((((.((((((((......)))..))))))))))).------))))))..))))- ( -56.10, z-score = -3.63, R) >droAna3.scaffold_13266 443414 172 + 19884421 UUUUUUUUCCUCCCAACUUCCUUUCCGACGGAAAGAUGGAAAAUCAAUUGCUAAAAAAUUCUGGAAUGAGAAGCGUGAUGUGACAGCAACUUCAGACAGUUGUCGACACCC---UUCUAG----CAUGGAAUUAUGGCUCACGGAAAUUAUAAGGAUGCUUCUCU--CCACUCUGGAGGGG-- .......((((......((((((((((.(.....).)))))).......((((...(((((((.....(((((.(((...(((((((...........))))))).))).)---))))..----..))))))).))))....))))......)))).....((((--((.....)))))).-- ( -45.00, z-score = -0.48, R) >dp4.chr3 14026527 159 + 19779522 ----------UUUUUUCCGCCCU-------GUGAGAUGGAAAAUCAAUUGC----AAGUCAUGGAACGGGAGGCGUGAUGCGACAGCAACUUCUGAAGUUCUUCGUUGCAUGAAUUAUGCUCCCCAUUCACUCGCAUCCUUCGGACAUGCCAAGGGACGGAGGAAGAGUGGAGGAGGGAG--- ----------....((((.((((-------((((..((.((......)).)----)..))))))...(((..((((((((((((((.((((.....))))))..))))))....))))))..))).(((((((...(((((((..(........)..))))))).))))))))).)))).--- ( -55.00, z-score = -1.28, R) >droPer1.super_4 5869353 162 - 7162766 ----------UUUUUGCCGCCCU-------GUGAGAUGGAAAAUCAAUUGC----AAGUCAUGGAACGGGAGGCGUGAUGCGACAGCAACUUCUGAAGUUCUUCGUUGCAUGAAUUAUGCUCCCCAUUCACUCGCAUCCUUCGGACAUGCCAAGGGAGGGAGGAAGAGUGGAGUGGUGAAGUG ----------.(((..((((.((-------((((..((.((......)).)----)..))))))...(((..((((((((((((((.((((.....))))))..))))))....))))))..))).(((((((...((((((((.....))....))))))....)))))))))))..))).. ( -53.80, z-score = -0.76, R) >consensus __UUUUUUCGCUCCCGCUCUCGU_______GAAAGAUGGAAAAUCAAUUGC__GAAAACUUGGGAACGAGAAGCGUGAUGUGACAGCAACUUCUGA_AGUUGUCGUCACCC___UUCUGG____CGUGGAGUUAUGCAUCAAGGAUAUGAUGAGGAUGCUCCAC_____GCGGUGGAAGGGG_ ..........((.((((.................(((.....)))........................((.((((((((((.(.((((((......)))))).).)))......((((.......))))))))))).))................................)))).)).... (-12.88 = -12.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:59 2011