| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,649,234 – 2,649,351 |
| Length | 117 |
| Max. P | 0.824200 |
| Location | 2,649,234 – 2,649,351 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.56 |
| Shannon entropy | 0.65632 |
| G+C content | 0.43269 |
| Mean single sequence MFE | -27.35 |
| Consensus MFE | -12.73 |
| Energy contribution | -11.52 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2649234 117 + 23011544 ---GACUACCCUUUUGGGCACUGAUUUCACAAGGUUGUCAUCCACCCUUUUUAGGCUUGACCUUUUAGUUACAUCGCUUUGAAACAAAGUUGGUCUUAGAGAAUUUGUAUCUAAUUUAUC ---..........(..(((.((((......((((.((.....)).)))).)))))))..)....((((.((((...((((((.((.......)).))))))....)))).))))...... ( -19.70, z-score = 0.67, R) >droSim1.chr2L 2608802 109 + 22036055 ---GACUACCUUUUUGGGCACUGAUUUCUCGAGGUUGUUGUCCACCCUUUUUAGGCUCGACCUUUUGGUUAUAUCGCUUUGAAACAAAGUCGGUGGUCUAGAACACAUUUCA-------- ---(((((((.....((((.((((......((((.((.....)).)))).))))))))((((....)))).....((((((...)))))).)))))))..............-------- ( -27.60, z-score = -1.11, R) >droSec1.super_5 817645 114 + 5866729 ---GACUACCUUUUUGGGCACUGAUUUCUCGAGGUUAGUAUCC---CGUUUUAGGCUCGACCUUUUGGUUAUAUCGCUUUGAAACAAAGUCGGUGGUCUAGAACACAUUUCAAUAGUGUA ---............(((.((((((((....))))))))..))---)(((((((((..((((....)))).((((((((((...))))).))))))))))))))(((((.....))))). ( -33.50, z-score = -2.58, R) >droYak2.chr2L 2640384 96 + 22324452 ---GACUACCUUCUUGGGCGCUGAUUUUUCGAGGCUGUUAUCCAUCCUUUUUAGGCUCGACCUUUUGGUUACAUCGCUUGGCAACAAAGUCGGUGGUCU--------------------- ---(((((((..(((.((((.((.....(((((.(((..(........)..))).)))))((....))...)).))))((....)))))..))))))).--------------------- ( -30.90, z-score = -2.71, R) >droEre2.scaffold_4929 2694257 117 + 26641161 ---GACUACCCUCUUGGGCACUGAUUUUUCGAGGUUGUUAUCCACCCUUUUUAGGCUCGACCUUUUGGUUAUAUCGCUUUGAAACAAGGUCGGUGGUCUGGAACACAAUUCAAUAGUGCG ---(((((((.....((((.((((......((((.((.....)).)))).))))))))((((((....(((........)))...))))))))))))).....(((.........))).. ( -29.20, z-score = -0.47, R) >droAna3.scaffold_12984 57385 108 + 754457 GCAAACUCUUUUUUUAGGAAUAUCUUUUCCGCAGUUUUGGCUAACCCCCUUCAAACUGGACUUUCUGUUCAAAUUGGACUGCGGUCUAGGACACACACUCGGUCUGGA------------ ......((((.....)))).........((((((((..((....)).....(((..(((((.....)))))..)))))))))))(((((..(........)..)))))------------ ( -23.20, z-score = -0.15, R) >consensus ___GACUACCUUUUUGGGCACUGAUUUCUCGAGGUUGUUAUCCACCCUUUUUAGGCUCGACCUUUUGGUUAUAUCGCUUUGAAACAAAGUCGGUGGUCUAGAACACAUUUCA________ ........(((....)))(((((((((...(((.(((..(........)..))).)))((((....))))................)))))))))......................... (-12.73 = -11.52 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:55 2011