| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,334,098 – 8,334,162 |
| Length | 64 |
| Max. P | 0.899462 |
| Location | 8,334,098 – 8,334,162 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 94.06 |
| Shannon entropy | 0.11244 |
| G+C content | 0.40840 |
| Mean single sequence MFE | -8.90 |
| Consensus MFE | -8.15 |
| Energy contribution | -7.65 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8334098 64 - 21146708 GCAUUCUUAUUUAAAUGCCGCUUCCUUUUUCCUGCUGCCCUCUGUCAACUAAAUGAUAGUGUUA (((((........))))).((............))....(.((((((......)))))).)... ( -8.20, z-score = -1.83, R) >droAna3.scaffold_13266 443131 64 - 19884421 GUAUUCUCAUUUAAAUGUCGCUUCCUUUUUCCUGCUGCUCUCUGGCAACUAAAUGAUAGUGUUA .((((.(((((((......((............))((((....))))..))))))).))))... ( -8.70, z-score = -1.38, R) >droEre2.scaffold_4845 5133918 63 + 22589142 GCAUUCUCAUUUAAAUGCCGCUUCCUUUUUCCUGCUGCCCUCUGUCAACUAAAUGAUAGUGUA- (((((.(((((((...((.((............)).)).....(....)))))))).))))).- ( -9.60, z-score = -2.51, R) >droYak2.chr2R 12537844 63 + 21139217 GCAUUCUCAUUUAAAUGCCGCUUCCUUUU-CCUGCUGCCCUCUGUCAACUAAAUGAUAGUGUUA (((((.(((((((...((.((........-...)).)).....(....)))))))).))))).. ( -9.10, z-score = -2.24, R) >droSec1.super_1 5883665 64 - 14215200 GCAUUCUCAUUUAAAUGCCGCUUCCUUUUGCCCGCUGCCCUCUGUCAACUAAAUGAUAGUGUUA (((((........))))).((........))........(.((((((......)))))).)... ( -8.90, z-score = -1.38, R) >droSim1.chr2R 6811436 64 - 19596830 GCAUUCUUAUUUAAAUGCCGCUUCCUUUUGCCCGCUGCCCUCUGUCAACUAAAUGAUAGUGUUA (((((........))))).((........))........(.((((((......)))))).)... ( -8.90, z-score = -1.54, R) >consensus GCAUUCUCAUUUAAAUGCCGCUUCCUUUUUCCUGCUGCCCUCUGUCAACUAAAUGAUAGUGUUA (((((.(((((((...((.((............)).)).....(....)))))))).))))).. ( -8.15 = -7.65 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:58 2011