| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,329,680 – 8,329,777 |
| Length | 97 |
| Max. P | 0.620358 |
| Location | 8,329,680 – 8,329,777 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 86.00 |
| Shannon entropy | 0.19093 |
| G+C content | 0.48790 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -25.69 |
| Energy contribution | -26.13 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8329680 97 + 21146708 AAAAACCCGCCCACU----UCAAAUGCCUUGUGUCUUCUUUAUUUCGUAAGAGAUUCCGAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACAACAUU ...(((((((((((.----......((((((.((((.(((........)))))))..)))).))))))))(((((.....)))))...)))))........ ( -33.01, z-score = -2.90, R) >droSim1.chr2R 6807080 100 + 19596830 AAAAACCUGCCCAGUGUGUCUCGGUGCGAC-UGUCUCCUUUAUUUCGUAAGAGAUUGCAAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACCACAUC ........((((((((...(((((((((..-(((.......(((((....))))).)))..)))(((((...))))))))))).))))))))......... ( -31.50, z-score = -0.97, R) >droSec1.super_1 5879008 98 + 14215200 AAAAACCUGCCCAGUGU--CUAGGUGCGAC-UGUCUCCUUUAUUUCUUAAGAGAUUGCAAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACCACAUC ........(((((((((--(((((..(...-.(((((.((........))))))).....)..)(((((...))))).))))).))))))))......... ( -29.70, z-score = -0.89, R) >consensus AAAAACCUGCCCAGUGU__CUAGGUGCGAC_UGUCUCCUUUAUUUCGUAAGAGAUUGCAAGUGCGUGGGUGGCCCACAUUGGGUCAUUGGGUUACCACAUC ...((((((((((((........((((.....((((.(((........))))))).....))))(((((...))))))))))))....)))))........ (-25.69 = -26.13 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:57 2011