| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,325,003 – 8,325,102 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 8,325,003 – 8,325,102 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.66 |
| Shannon entropy | 0.38325 |
| G+C content | 0.51880 |
| Mean single sequence MFE | -31.62 |
| Consensus MFE | -21.93 |
| Energy contribution | -22.30 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 8325003 99 + 21146708 GCAUAGCAUUGCGGUUUAAAGCCAGGCUCAAAAUUCCUGCGAGCUCGCU----UGUGUGUGUGCGUUUUUGCCGUCGGUGUGUAUGUGUUUUGAGCCCAUAAG (((......)))(((.....))).((((((((((.(.((((.((.(((.----.....))).))......(((...))).)))).).))))))))))...... ( -29.30, z-score = -0.83, R) >droSim1.chr2R 6802406 99 + 19596830 GCAUAGUAUUGCGGCUUAAAGCCAGGCUCAAAAUUCCUGCGAGCGCGCU----UGUGUGUGUGCGUUUUUGCCGUCGGUGUGUAUGUGUUUUGAGCCCAUAAG (((......)))(((.....))).((((((((((.(.(((((((((((.----.......))))))))..(((...)))..))).).))))))))))...... ( -35.40, z-score = -2.35, R) >droSec1.super_1 5874367 99 + 14215200 GCAUAGCAUUGCGGCUUAAAGCCAGGCUCAAAAUUCCUGCGAGCGCGCU----UGUGUGUGUGCGUUUUUGCCGUCGGUGUGUAUGUGUUUUGAGCCCAUAAG (((......)))(((.....))).((((((((((.(.(((((((((((.----.......))))))))..(((...)))..))).).))))))))))...... ( -35.40, z-score = -1.74, R) >droYak2.chr2R 12528633 101 - 21139217 GCAUCG-AUUGCGGUUUAAAACCAGGCUCCGA-UUCCUGUGAGCCCGCGUGUGUGUGUGUGUGCGUUUGUGCCAACGGUGUGUAUGUGUUUUGAGCCCAUAAG (((...-..)))(((((((((((((((((((.-....)).)))))((((..(......)..))))...(..((...))..)...)).))))))))))...... ( -29.60, z-score = -1.05, R) >droEre2.scaffold_4845 5124635 99 - 22589142 GCAUAG-AUUGCGGCUUAAAGCCAGGCUUCAA-UUCCUGUGAGCGCGCGCG--UGUGUGUGUGCGUUUGUGCCAUCGGUGUGUAUGUGUUUUGAGCCCAUAAG (((...-..)))((((((((((((.....((.-..((.(((.(((((.(((--..(....)..))).)))))))).))..))..)).))))))))))...... ( -35.40, z-score = -1.70, R) >droAna3.scaffold_13266 435076 84 + 19884421 -----GCAGAGCGGAUUAAAACUGGGCCUUA--UUAUCGUGUGCGCG------UGUGUGUUGGUGUU---GCUGUGUGCGUGUUUGCGU---GGGCCCACAAG -----.................(((((((..--....((((.(((((------((..(((.......---)).)..))))))).)))).---))))))).... ( -24.60, z-score = 0.86, R) >consensus GCAUAGCAUUGCGGCUUAAAGCCAGGCUCAAA_UUCCUGCGAGCGCGCU____UGUGUGUGUGCGUUUUUGCCGUCGGUGUGUAUGUGUUUUGAGCCCAUAAG (((......)))((((((((((((..(..........((((.((((((......)))))).)))).....((.....))..)..)).))))))))))...... (-21.93 = -22.30 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:55 2011