| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,322,866 – 8,322,979 |
| Length | 113 |
| Max. P | 0.969500 |
| Location | 8,322,866 – 8,322,979 |
|---|---|
| Length | 113 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.79 |
| Shannon entropy | 0.44437 |
| G+C content | 0.63190 |
| Mean single sequence MFE | -45.97 |
| Consensus MFE | -32.31 |
| Energy contribution | -33.99 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8322866 113 - 21146708 ---CGGAGCGCGGUUCAAGGACACGCGGCUCAGACUCCUCGCUCAGAGUCGCAGGCAACGAAAAAGCCGCUGUGUUCGGGCGCUAGGCAAGCCCACGCCUCCGCCCAUCGGCAACU ---.((((.(((......((((((((((((..(((((........)))))...(....).....)))))).))))))((((.........)))).)))))))(((....))).... ( -51.40, z-score = -2.54, R) >droSim1.chr2R 6800260 113 - 19596830 ---CGGAGCCCGGUUCAAGGACACGCGGCUCAGACUCCUCGCUCAGAGUCGCAGGCAACGAAAAAGCCGCUGUGUUCGGGCGCUAGGCAAGCCCACGCCUCCGCCCAUCGGCAACU ---....(((.(((....((((((((((((..(((((........)))))...(....).....)))))).))))))(((((..((((........)))).))))))))))).... ( -48.80, z-score = -2.11, R) >droSec1.super_1 5872227 113 - 14215200 ---CGGAGCCCGGUUCAAGGACACGCGGCUCAGACUCCUCGCUCAGAGUCGCAGGCAACGAAAAAGCCGCUGUGUUCGGGCGCUAGGCAAGCCAACGCCUCCGCCCAUCGGCAACU ---....(((.(((....((((((((((((..(((((........)))))...(....).....)))))).))))))(((((..((((........)))).))))))))))).... ( -48.80, z-score = -2.26, R) >droYak2.chr2R 12526366 113 + 21139217 ---CGGAGCGCGUUUCAAGGACACGCGGCUCAGACUCCUCGCUCAGAGUCGCAGACAACGAAAAAGCCGCUGUGUUCGGGCGUUAGGCAAGCCCACGCCUCCGCCCAUCGGCAUCU ---.((((.((((.....((((((((((((..(((((........)))))(....)........)))))).))))))((((.........))))))))))))(((....))).... ( -48.00, z-score = -2.67, R) >droEre2.scaffold_4845 5122455 113 + 22589142 ---CGGAGCGCGGUUCAAGGACACGCGGCUCAGACUCCUCGCUCAGAGUCGCAGGCAACGUAAAAGCCGCUGUGUUCGGGCGCUAGGCAAGCCCACGCCUCCGCCCAUCGGCUUCU ---.(((((.((((....((((((((((((..(((((........)))))...(....).....)))))).))))))(((((..((((........)))).)))))))))))))). ( -53.30, z-score = -3.00, R) >droAna3.scaffold_13266 432832 113 - 19884421 ---CGGCGUGCGGUUCAAGGACACGCGGCGUAGACUUCGCGCGCAGCGUCGCAGGAAUCACAAUAGCCGCAGUGCCCGGGCGCUCCGCAAACCAAAUCUCUUGCCACUUGGCAGCU ---.(((.((.(((((..((((.(((((((.......))).))).).))).)..))))).))...)))(((((((....)))))..))............(((((....))))).. ( -40.20, z-score = 0.85, R) >droWil1.scaffold_180701 831330 106 - 3904529 AGUAGGCGUUAGGUUCAAGGACACGCGGCGCAUACGACGGUCUCCAAAUAGCCG---------CAGCCGCAGUGCCCGAGCCAAACAGAAGCUAAAAUUCCAGUGGCUAUCCAUU- ....((.(((.(((((..((.(((((((((....)(.((((.........))))---------).))))).))))).))))).)))...(((((.........)))))..))...- ( -31.30, z-score = -0.78, R) >consensus ___CGGAGCGCGGUUCAAGGACACGCGGCUCAGACUCCUCGCUCAGAGUCGCAGGCAACGAAAAAGCCGCUGUGUUCGGGCGCUAGGCAAGCCCACGCCUCCGCCCAUCGGCAACU .......((.((((....(((((((((((...(((((........)))))...(....)......))))).))))))(((((..((((........)))).))))))))))).... (-32.31 = -33.99 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:54 2011