| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,303,024 – 8,303,123 |
| Length | 99 |
| Max. P | 0.881072 |
| Location | 8,303,024 – 8,303,123 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 92.87 |
| Shannon entropy | 0.12397 |
| G+C content | 0.51086 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -26.50 |
| Energy contribution | -26.42 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8303024 99 + 21146708 AGCCAGUUGAAGUGGUCCACGAAUGGGUUACUGGCGUAGCCCCGAUUUCGCGCCGAGAAACCUCUUCGUUCUGCCAAUUAUUGUAUUUAACGUAGGCUA ((((.((((((.((((..(((((.(((((.(((((((............))))).)).))))).)))))...)))).........))))))...)))). ( -32.40, z-score = -2.21, R) >droEre2.scaffold_4845 5099805 92 - 22589142 AGCCAGUUGAAGUGGUCCACGAAUGGGUUACUGGCGUAGCUCCGAUUCC-CGCCGCGAAACCUCUUCGUUCUGCCAAUUA------UAAACGUAGGCUA ((((.(((.((.((((..(((((.(((((.((((((.............-))))).).))))).)))))...)))).)).------..)))...)))). ( -28.62, z-score = -1.45, R) >droYak2.chr2R 12496775 93 - 21139217 AGCUAGUUGAAGUGGUCCGCGAAUGGGUUACUGGCGUAGCCCCGAUUCC-CGCCGAGAAACCACUUCGUUCUGCCAAUUAU-----UUAACGUAGGUUA ..(((((((((.((((..(((((..((((.((((((.............-)))).)).))))..)))))...))))....)-----))))).))).... ( -26.72, z-score = -0.93, R) >droSec1.super_1 5848112 93 + 14215200 AGCCAGUUGAAGUGGUCCACGAAUGGGUUACUGGCGUAGCCGCGAUUCC-CGCCGAGAAACCUCUUCGUUCUGCCAAUUAU-----UUAACGUAGGCUA ((((.((((((.((((..(((((.(((((.((((((.............-)))).)).))))).)))))...))))....)-----)))))...)))). ( -32.72, z-score = -2.55, R) >droSim1.chr2R 6774578 93 + 19596830 AGCCAGUUGAAGUGGUCCACGAAUGGGUUACUGGCGUAGCCCCGAUUCC-CGCCGAGAAACCUCUUCGUUCUGCCAAUUAU-----UUAACGUUGGCUA (((((((((((.((((..(((((.(((((.((((((.............-)))).)).))))).)))))...))))....)-----)))))..))))). ( -33.12, z-score = -3.17, R) >consensus AGCCAGUUGAAGUGGUCCACGAAUGGGUUACUGGCGUAGCCCCGAUUCC_CGCCGAGAAACCUCUUCGUUCUGCCAAUUAU_____UUAACGUAGGCUA ((((.(((((..((((..(((((.(((((.((((((..............))))).).))))).)))))...))))..........)))))...)))). (-26.50 = -26.42 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:52 2011