| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,298,273 – 8,298,377 |
| Length | 104 |
| Max. P | 0.564759 |
| Location | 8,298,273 – 8,298,377 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.79 |
| Shannon entropy | 0.34951 |
| G+C content | 0.37371 |
| Mean single sequence MFE | -25.19 |
| Consensus MFE | -10.18 |
| Energy contribution | -11.70 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.564759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8298273 104 - 21146708 GAGUUUUGUAUACCAAUCGAGCUCACUGUUCUAAAU------UUUAACGUUAAUGUCUUCGUCUAUGGCCGUUAACUGCGGUCAGUUCUUUGAAGUGGUCUACAAAUCAU ..(.((((((.((((...((((.....)))).....------..............(((((....(((((((.....)))))))......))))))))).)))))).).. ( -27.40, z-score = -3.32, R) >droEre2.scaffold_4845 5094956 94 + 22589142 GGUUUUUGUAUCGCAAUCAAGCUCAUAGUUCUAAAU------UUAAGCGUUAAUGUCUUCGUUUACGGACGCUGAAU-------GUUCGUUUAAGUGGUCUAUAUAU--- ((((((((.....)))..))))).((((......((------(((((((......((..((((....))))..))..-------...)))))))))...))))....--- ( -15.30, z-score = 0.03, R) >droYak2.chr2R 12491826 110 + 21139217 GAACUUUGUAUGGCAAUUAAGCUCACAGUUCUAAAUAAACAAUUAAGCUUUUAUGUCUUCGUUUGUGGGCGCUAAAUGCGGUCAGUUCGUUAAAGUAGUCUAUGCAUCAU ......(((((((.......((((((((......(((((..........)))))........))))))))((((...((((.....)))).....))))))))))).... ( -21.14, z-score = -0.33, R) >droSec1.super_1 5843138 104 - 14215200 GGGUUUUGUAUAGCAAUCGAGCUCACUUUUCUAAAU------UUAAGCGAUAAUGUCUUCGUUUAUGGCCGCUAAAAGCGGUCAGUUCGUUAAAGUGGUCUACAAAUCAU .(((((.(((.(.((..(((((..............------.(((((((........)))))))(((((((.....))))))))))))......)).).)))))))).. ( -28.90, z-score = -3.61, R) >droSim1.chr2R 6769620 104 - 19596830 GGGUUUUGUAUACCAAUCGAGCUCACUUUUCUAAAU------UUAAGCGAUAAUGUCUUCGUUUAUGGCCGCAAAAAGCGGUCAGUUCGUUAAAGUGGUCUACAAAUCAU .(((((.(((.((((..(((((..............------.(((((((........)))))))(((((((.....))))))))))))......)))).)))))))).. ( -33.20, z-score = -5.39, R) >consensus GGGUUUUGUAUAGCAAUCGAGCUCACUGUUCUAAAU______UUAAGCGUUAAUGUCUUCGUUUAUGGCCGCUAAAUGCGGUCAGUUCGUUAAAGUGGUCUACAAAUCAU ((((((.((......)).))))))...................((((((..........))))))(((((((.....))))))).......................... (-10.18 = -11.70 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:51 2011