| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,280,587 – 8,280,679 |
| Length | 92 |
| Max. P | 0.636224 |
| Location | 8,280,587 – 8,280,679 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 61.73 |
| Shannon entropy | 0.69351 |
| G+C content | 0.34445 |
| Mean single sequence MFE | -19.54 |
| Consensus MFE | -4.58 |
| Energy contribution | -5.93 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8280587 92 + 21146708 UGGUUUGAUAAAUUAUCAAACAGCAGACUUCUCUUGUAAUCAAGACCAUUCAAGGGGUUCCAUUUGAAUCGGUCUGCGGUAAUUUAAAUAUC------------------- ..((((((((...)))))))).(((((((..(((((....)))))..(((((((.(....).))))))).)))))))...............------------------- ( -25.50, z-score = -3.60, R) >droSim1.chr2R 6750595 91 + 19596830 UGGUUUGAUAAAUU-UCAAACAGCAGACUUCUCUUGUAAUCAAGACCAUUCAAGGGGUUCCAUUUGAAUCGGUCUGCGGUAAUUUAAAUAUC------------------- ..((((((......-)))))).(((((((..(((((....)))))..(((((((.(....).))))))).)))))))...............------------------- ( -25.00, z-score = -3.38, R) >droSec1.super_1 5825369 92 + 14215200 UGGUUUGAUAAAUUAUCAAACAGCAGACUUCUCUUGUAAUCAAGACCAUUCAAGGGGUUCUAUUUGAAUCGGUCUGCGGUAAUUUAAAUAUC------------------- ..((((((((...)))))))).(((((((..(((((....)))))((......))(((((.....))))))))))))...............------------------- ( -26.50, z-score = -4.29, R) >droYak2.chr2R 12473711 92 - 21139217 UUUCUUGAUAAAUUAUGAAACAGCAGACUUCUCUUGUAAUCAAGACCAUUCAAGGGGUUCCGUUUGAGUCGGUCUCCAGUAAUUUAAAUAUC------------------- ........((((((((...((((.((....)).)))).....((((((((((((.(....).))))))).)))))...))))))))......------------------- ( -21.10, z-score = -1.96, R) >droEre2.scaffold_4845 5076936 81 - 22589142 ---CUUGAUAAAUUAUCAAACAGCAGAUUUCUCUUGUAAUCAAGACCAUUCAAGGGUCU--------AUCGGUUUCCAGUAAUUUAAAUAUA------------------- ---.....((((((((.((((....((((.(....).)))).(((((.......)))))--------....))))...))))))))......------------------- ( -13.00, z-score = -1.42, R) >droPer1.super_2 7696005 108 + 9036312 --GCUUGAUAAAUGUCUAACAAAUGAAUUUAUCAUGUAAUCCAAACUAAAUAAUGGUUUCU-UGUAGAUCGGCUCGUGGCAAAUGAAUAACAAACUUUCAAUUUAGAUGUU --((.((((((((.((........)))))))))).))........((((((...(((((.(-(((..((..((.....))..))..)))).)))))....))))))..... ( -17.50, z-score = -0.70, R) >droWil1.scaffold_181141 1125818 74 - 5303230 -----------AUUGGAACAUUAUGGCAUCUCCAUUGAGGCA----CACAAAAACACUCACACUCACAUUGGCAUG-AGUAAAAAAUAGA--------------------- -----------......((.(((((.((.......((((...----..........)))).........)).))))-)))..........--------------------- ( -8.21, z-score = 0.70, R) >consensus U_GCUUGAUAAAUUAUCAAACAGCAGACUUCUCUUGUAAUCAAGACCAUUCAAGGGGUUCCAUUUGAAUCGGUCUGCGGUAAUUUAAAUAUC___________________ ......................(((((((..(((((....)))))((......))...............))))))).................................. ( -4.58 = -5.93 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:49 2011