| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,230,570 – 8,230,645 |
| Length | 75 |
| Max. P | 0.530436 |
| Location | 8,230,570 – 8,230,645 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 84.67 |
| Shannon entropy | 0.27026 |
| G+C content | 0.42730 |
| Mean single sequence MFE | -17.02 |
| Consensus MFE | -10.18 |
| Energy contribution | -11.66 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8230570 75 + 21146708 GAGCAAUCCGAAAAGUGCUUCGUGAAUGAUUAGUGGAACUCAAAGUUCCCACUUCCUAUCGCAAUGUGCUUAUCU ((....)).((.(((..(...((((......((((((((.....))).))))).....))))...)..))).)). ( -19.00, z-score = -2.60, R) >droEre2.scaffold_4845 5027238 68 - 22589142 GCACAAUCCGAAAAGAGCUUCGUGAAUGAUUAGUGAAACUCAAAGUUCCCACUGCUUAUCGCUUAUUU------- ((....((((((......)))).))((((.(((((.(((.....)))..))))).)))).))......------- ( -11.00, z-score = -0.64, R) >droYak2.chr2R 12419662 74 - 21139217 GCGCAAUCCGAAUAGAGCUUCGUGAAAGAUUGGUGAA-CUCAAAGUUCCCACUGCGUAUUGCUUAGCGCUUAUCU ((((..((((((......)))).)).....(((.(((-(.....)))))))..............))))...... ( -17.50, z-score = -0.63, R) >droSec1.super_1 5776383 75 + 14215200 GAACAAUCCGAAAAGUGCUUCGUGAAUGAUUAGUGGAACUCAAAGUUCCCACUUCCUAUCGCCUUGUGCUUAUCU .........((.(((..(...((((......((((((((.....))).))))).....))))...)..))).)). ( -18.80, z-score = -3.19, R) >droSim1.chr2R 6699399 75 + 19596830 GAACAAUCCGAAAAGUGCUUCGUGAAUGAUUAGUGGAACUCAAAGUUCCCACUUCCUAUCGCCUUGUGCUUAUCU .........((.(((..(...((((......((((((((.....))).))))).....))))...)..))).)). ( -18.80, z-score = -3.19, R) >consensus GAACAAUCCGAAAAGUGCUUCGUGAAUGAUUAGUGGAACUCAAAGUUCCCACUUCCUAUCGCCUUGUGCUUAUCU .........((.((((((...((((......((((((((.....))).))))).....))))...)))))).)). (-10.18 = -11.66 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:45 2011