| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,230,050 – 8,230,148 |
| Length | 98 |
| Max. P | 0.681806 |
| Location | 8,230,050 – 8,230,148 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.60 |
| Shannon entropy | 0.33586 |
| G+C content | 0.36235 |
| Mean single sequence MFE | -16.84 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8230050 98 + 21146708 CCAAAGGAAGCCUAUGCAUAAUACUUCGCUGUUCUGGAAAAGGUUGUUUAAACAAAUGACUUUACUGUUCAACUCGUAAACAUUUCACUGUUUACAAA (((.((((((..(((.....))))))).))....)))..(((((..(((....)))..)))))............(((((((......)))))))... ( -16.60, z-score = -0.49, R) >droEre2.scaffold_4845 5026762 81 - 22589142 -----------------CUAAUACUUCGCUAUUCUGGAAAAGGCUGUUUAAACAAACGACUUUACUGUUCGAGUCGUAAACAUUUCGCUGUUUACAGC -----------------......(((..((.....))..)))(((((........(((((((........)))))))(((((......)))))))))) ( -15.50, z-score = -0.93, R) >droYak2.chr2R 12419185 81 - 21139217 -----------------CUAAUACUUCGCUGUUCUGGAAAAGGUUGUUUAAAUAAACGACUCUACUGUUCGAGCCGUAAACAAUUCGCUGUUUACGGC -----------------(((..((......))..)))...(((((((((....))))))).)).........((((((((((......)))))))))) ( -21.10, z-score = -2.69, R) >droSec1.super_1 5775864 83 + 14215200 ---------------CCAAAGGAAAAAGCUGUUCUGGAAAAAGUUGUUUAAACAAACGACUUUACUGUUCAAGUCGUAAACAUUUCGCUGUUUACAAA ---------------(((..((......))....)))..((((((((((....))))))))))............(((((((......)))))))... ( -15.70, z-score = -0.86, R) >droSim1.chr2R 6698671 83 + 19596830 ---------------CCAAAGGAAAAAGCUGUUCUGGAAUAAGUUGUUUAAACAAACGACUUUACUGUUCAAGUCGUAAACAUUUCGCUGUUUACAAA ---------------.....((((.......)))).(((((((((((((....))))))))....))))).....(((((((......)))))))... ( -15.30, z-score = -0.79, R) >consensus ________________CAUAAUACUUCGCUGUUCUGGAAAAGGUUGUUUAAACAAACGACUUUACUGUUCAAGUCGUAAACAUUUCGCUGUUUACAAA ..................................((((.((((((((((....))))))))))....))))....(((((((......)))))))... (-13.64 = -13.60 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:43 2011