Locus 383

Sequence ID dm3.chr2L
Location 2,629,445 – 2,629,556
Length 111
Max. P 0.641424
window522

overview

Window 2

Location 2,629,445 – 2,629,556
Length 111
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 80.13
Shannon entropy 0.25646
G+C content 0.60420
Mean single sequence MFE -31.77
Consensus MFE -22.14
Energy contribution -23.58
Covariance contribution 1.45
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.32
SVM RNA-class probability 0.641424
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 2629445 111 + 23011544
CUUGGGAGUCCAGACUCCCGAACCCCGAACCCCGAUCCCCGGACUCCAAACUCGAAACUCGCAACUCGCAACUCCGAAUUGCCCGACUCCGGGCUGAAAGCUGUUCCGGCU
.((((((((....))))))))..((.((((..(..((((((((.((.......(.....)((((.(((......))).))))..)).))))))..))..)..)))).)).. ( -34.80, z-score =  -2.35, R)
>droSim1.chr2L 2587847 90 + 22036055
--------------CUUGGGAGUCCAGACUCCCGAUCCCCGGACUCCAAACUCGAAACUCGC-------AACUCCGAAUUGCCCGACUCCGGGCUGAAAGCUGUUCCGGCU
--------------.((((((((....))))))))...(((((...............(((.-------.....)))...(((((....)))))..........))))).. ( -29.50, z-score =  -1.73, R)
>droSec1.super_5 797710 90 + 5866729
--------------CUUGGGAGUCCAGACUCCCGAUCCCCGGACUCCAAACUCGAAACUCGC-------AACUCCGAAUGGCCCGACUCCGGGCUGAAAGCUGUUCCGGUU
--------------.((((((((....))))))))...(((((...............(((.-------.....)))..((((((....)))))).........))))).. ( -31.00, z-score =  -1.46, R)
>consensus
______________CUUGGGAGUCCAGACUCCCGAUCCCCGGACUCCAAACUCGAAACUCGC_______AACUCCGAAUUGCCCGACUCCGGGCUGAAAGCUGUUCCGGCU
...............((((((((....))))))))...(((((........(((....................)))...(((((....)))))..........))))).. (-22.14 = -23.58 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:54 2011