| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,180,318 – 8,180,399 |
| Length | 81 |
| Max. P | 0.788085 |
| Location | 8,180,318 – 8,180,399 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 82.09 |
| Shannon entropy | 0.29387 |
| G+C content | 0.53792 |
| Mean single sequence MFE | -16.66 |
| Consensus MFE | -14.36 |
| Energy contribution | -14.08 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8180318 81 - 21146708 CCCCUUAUUUUAGCCACCUCGCCAUAGUGUUGGCUUUCUAACUCGGCCCGCACACGCGAAUUCGCACUUAGCCUCUUGAGU ............((....((((....((((.((((.........)))).))))..))))....))((((((....)))))) ( -17.30, z-score = -0.93, R) >droEre2.scaffold_4845 4975428 64 + 22589142 -----------------CCCGCCAUAGUGUUGGCUUUCUAACUCAGCCCGCACACGCGAAUUCGCACUUAGCCCCUUGAGU -----------------.........((((.((((.........)))).))))..(((....)))((((((....)))))) ( -16.00, z-score = -1.73, R) >droYak2.chr2R 12370680 64 + 21139217 -----------------CUCGCCAUAGUCUUGGCUUUCUAACUCGACCCGCACACGCGAAUUCACACUUAGCCCGUCGAGU -----------------...((((......))))......(((((((.(((....)))......(.....)...))))))) ( -15.90, z-score = -2.10, R) >droSec1.super_1 5728148 81 - 14215200 CCCCUUAUUUUAGCCACCUCGCCAUAGUGUUGGCUUUCUAACUCGGCCCGCACACGCGAAUUCGCACUUAGCCACUUGAGU ............((....((((....((((.((((.........)))).))))..))))....))((((((....)))))) ( -17.30, z-score = -0.98, R) >droSim1.chr2R 6647295 81 - 19596830 CCCCUUAUUUUAGCCACCUCGCCAUAGUGUUGGCUUUCUAACUCGGCUCGCACACGCGAAUUCGCACUUAGCCACUUGAGU .................(((((((......))))..........((((.......(((....)))....))))....))). ( -16.80, z-score = -0.66, R) >consensus CCCCUUAUUUUAGCCACCUCGCCAUAGUGUUGGCUUUCUAACUCGGCCCGCACACGCGAAUUCGCACUUAGCCACUUGAGU ....................((((......))))......((((((...((....(((....))).....))...)))))) (-14.36 = -14.08 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:34 2011