| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,175,497 – 8,175,611 |
| Length | 114 |
| Max. P | 0.720502 |
| Location | 8,175,497 – 8,175,611 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 86.33 |
| Shannon entropy | 0.23049 |
| G+C content | 0.43008 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -24.54 |
| Energy contribution | -24.78 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8175497 114 + 21146708 GACUGACAGCUCGGACACAUGAUGGCUGGCUGGCUGUUCGGAGUGGAGUCGGAAUUUUAGAAGAAGUUGUCAUGUGAUUGUUAGUCACGAAAUAAAUUGUGGAGGUUUUCAAGU (((((((((......(((((((..(((..((((..((((.((......)).)))).))))....)))..))))))).)))))))))..((((..............)))).... ( -32.34, z-score = -1.42, R) >droSim1.chr2R 6642467 110 + 19596830 GACUGACAGCUCGGACACAUGAUGGCUGGCU----GUUCGUAGUGGAGUCGGAAUUUUUGAAGAAGUUGUCAUGUGAUUGUUAGUCACAAAAUAAAUUGUGGAGGUUUUCGAGU ........((((((((((((((..(((..((----((((......))).)))............)))..)))))))........((((((......)))))).....))))))) ( -29.54, z-score = -0.98, R) >droSec1.super_1 5723323 110 + 14215200 GACUGACAGCUCGGACACAUGAUGGCUGGCU----GUUCGGAGUGGAGUCGGAAUUUUUGAAGAAGUUGUCAUGUGAUUGUUAGUCACAAAAUAAAUUGUGGAGGUUUUCAAGU (((((((((......(((((((..(((..(.----((((.((......)).))))....)....)))..))))))).)))))))))((((......)))).............. ( -29.10, z-score = -0.86, R) >droYak2.chr2R 12365863 99 - 21139217 GACUGACAGCUCGGACACAUGAUGGCUGGCU----GUUCGCAGCGGAGUAGAAAUUUUCAAAGAAGUUGUCAUGUGAUUGUUAGUCAUAAAAUAAAUAGUGGA----------- (((((((((......(((((((..(((.(((----(....))))((((.......)))).....)))..))))))).))))))))).................----------- ( -31.70, z-score = -3.20, R) >droEre2.scaffold_4845 4970403 99 - 22589142 GACUGACAACUCGGACUCAUGAUGGCUGGCU----GUUCGCAGCGGAGUAGGAAUUUUUCAAGAAGUUGUCAUGUGAUUGUUAGUCAUCAAACAAAUUGUGGA----------- (((((((((.(((....(((((..(((.(((----(....))))((((........))))....)))..))))))))))))))))).................----------- ( -30.40, z-score = -1.80, R) >consensus GACUGACAGCUCGGACACAUGAUGGCUGGCU____GUUCGCAGUGGAGUCGGAAUUUUUGAAGAAGUUGUCAUGUGAUUGUUAGUCACAAAAUAAAUUGUGGAGGUUUUC_AGU (((((((((......(((((((..(((..((....((((............))))......)).)))..))))))).)))))))))............................ (-24.54 = -24.78 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:30 2011