| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,171,312 – 8,171,405 |
| Length | 93 |
| Max. P | 0.912414 |
| Location | 8,171,312 – 8,171,405 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.19 |
| Shannon entropy | 0.28771 |
| G+C content | 0.51999 |
| Mean single sequence MFE | -31.87 |
| Consensus MFE | -27.77 |
| Energy contribution | -27.50 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8171312 93 - 21146708 --------------GCCGGAAUCCGCCAUCGUAAAUGCAGACAUUCGGUGGCUGGAUGGCUAAAAAAAAAGGGUUUUAUGGAGUCCUUAGCCGGGCUCCGCGAAAUG --------------(((...(((((((((((..((((....))))))))))).)))))))............((((..((((((((......))))))))..)))). ( -36.60, z-score = -3.02, R) >droSec1.super_1 5719238 90 - 14215200 --------------GCCGGAAUCCGCCAUCGUAAAUGCAGACAUUCGGUGGCUGGAUGGCU---AAAAAAGGGUUUUAUGGAGUCCUUAGCCGGGCUCCUCGAAAUG --------------(((...(((((((((((..((((....))))))))))).))))))).---........(((((..(((((((......)))))))..))))). ( -35.00, z-score = -2.75, R) >droSim1.chr2R 6637863 90 - 19596830 --------------GCCGGAAUCCGCCAUCGUAAAUGCAGACAUUCGGUGGCUGGAUGGCU---AAAAAAGGGUUUUAUGGAGUCCUUAGCCGGGCUCCGCGAAAUG --------------(((...(((((((((((..((((....))))))))))).))))))).---........((((..((((((((......))))))))..)))). ( -36.60, z-score = -2.93, R) >droYak2.chr2R 12361630 89 + 21139217 --------------GCUGUAAUCCGCCAUCGUAAAUGCAGACAUUUGGAGGCUGGAUGGCU----GAAAAGGGUUUUAUGGUGUCCUUAGCCGGGCUUCGCGAAAUG --------------(((...(((((((.((.((((((....))))))))))).))))))).----.......((((..(((.((((......)))).)))..)))). ( -24.30, z-score = 0.27, R) >droEre2.scaffold_4845 4966403 89 + 22589142 --------------GCUGGAGUCCGCCAUCGUAAAUGCAGACAUUCGCUGGCUGGAUGGCU----GAAAAGGGUUUUAUGGAGUUCUUAGCCGGGCUUCGCGAAAUG --------------((.(((((((((((..(..((((....))))..))))).....((((----(...((..(((....)))..))))))))))))))))...... ( -30.80, z-score = -1.35, R) >droAna3.scaffold_13266 5463194 103 - 19884421 GGAGCCGUGUGGAAUUCACAGUCCGCCAUCGUAAAUGCAGACAUUUUGUGGCCCGGAGAAC---GAAAAAGGGUUUUAUGGAGUCCUUAGCC-GGCUUAGCGGAAUG .((((((.(((((.((((.(..(((((((...(((((....))))).))))).((.....)---).....))..)...)))).)))...)))-)))))......... ( -27.90, z-score = 0.31, R) >consensus ______________GCCGGAAUCCGCCAUCGUAAAUGCAGACAUUCGGUGGCUGGAUGGCU___AAAAAAGGGUUUUAUGGAGUCCUUAGCCGGGCUCCGCGAAAUG ..............(((...(((((((((((..((((....))))))))))).)))))))............((((..((((((((......))))))))..)))). (-27.77 = -27.50 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:29 2011