| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,158,536 – 8,158,596 |
| Length | 60 |
| Max. P | 0.890637 |
| Location | 8,158,536 – 8,158,596 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 95.70 |
| Shannon entropy | 0.05924 |
| G+C content | 0.36416 |
| Mean single sequence MFE | -9.81 |
| Consensus MFE | -9.53 |
| Energy contribution | -9.31 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8158536 60 + 21146708 GGCGCACGGCAACAGUGCGGAUGUGAA--AGAACAAUUAAAAUGAAAUAUAUAAAUAUUGUG ..((((((....).)))))..(((...--...)))........................... ( -10.40, z-score = -1.32, R) >droSim1.chr2R 6625033 62 + 19596830 GGCGCACGGCAACAGUGCGGAUGGGAAAAAGAACAAUUAAAAUGAAAUAUAUAAAUAUUGUG ..((((((....).))))).............(((((...................))))). ( -9.91, z-score = -1.91, R) >droSec1.super_1 5706728 62 + 14215200 GGCGCAUGGCAACAGUGCGGAUGGGAAAAAGAACAAUUAAAAUGAAAUAUAUAAAUAUUGUG .((((.((....))))))..............(((((...................))))). ( -9.11, z-score = -1.55, R) >consensus GGCGCACGGCAACAGUGCGGAUGGGAAAAAGAACAAUUAAAAUGAAAUAUAUAAAUAUUGUG ..((((((....).))))).............(((((...................))))). ( -9.53 = -9.31 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:27 2011