| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,151,584 – 8,151,688 |
| Length | 104 |
| Max. P | 0.638305 |
| Location | 8,151,584 – 8,151,688 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 65.03 |
| Shannon entropy | 0.61755 |
| G+C content | 0.44274 |
| Mean single sequence MFE | -25.45 |
| Consensus MFE | -10.42 |
| Energy contribution | -10.67 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8151584 104 - 21146708 -----AUACAUAUAUACAUACAUAUAUGUGACAAGAGACGUGCGAGUUGUCAGUUUCA--CAGGAGCCGGUCGGUCAUUCUGGCC--AAAAACGAUUCUCAGGGUCUAAUGUU -----.(((((((((......)))))))))(((..((((.((.(((((((..((((..--...)))).((((((.....))))))--....))))))).)).).)))..))). ( -30.10, z-score = -2.40, R) >droAna3.scaffold_13266 5445986 113 - 19884421 CUAGUUUUUUGUUUUAUUGUCAUGCGAAUGACAAGGGACGUGUGAGUUGUCAGUUUCAGGAACCGGAAACCCCAAGAGUUUAACCCAAGAAAUGCUAUACAAGAUCUAUUAUU ...((((((((..((((((((((....)))))))((((((.......)))).(((((.(....).))))).)).......)))..)))))))).................... ( -22.50, z-score = -0.18, R) >droEre2.scaffold_4845 4947111 79 + 22589142 ------------------------UUUGUGACAAGAGACGUGCGAGUUGUCAGCU--------UCGGGAGCCGGUUAUUCUGGCC--AAAAACGAUUCUCGGGGUCUAAUGUU ------------------------.....((((..((((.(.((((..(((..(.--------...)(.(((((.....))))))--......))).)))).)))))..)))) ( -23.70, z-score = -1.00, R) >droYak2.chr2R 12340902 80 + 21139217 ------------------------UAUGUGACAAGAGACGUGCGAGUUGUCAGUU-------UUCAGGAGCCGGUCAUUCUGGCC--AAAAACGAUUCUCGGGGUCUAAUGUU ------------------------.....((((..((((.(.((((..(((.(((-------((...(.(((((.....))))))--.)))))))).)))).)))))..)))) ( -25.10, z-score = -1.94, R) >droSec1.super_1 5700237 104 - 14215200 -----CUACAUACAAACAUUCAUAUAUGUGACAUGAGACGUGCGAGUUGUCAGCUUCA--CAGGAGCUGGUCGGUCAUUCUGGCC--AAAAACGAUUCUCAGGGUCUAAUGUU -----..........((((......))))(((((.((((.((.(((((((((((((..--...))))))...((((.....))))--....))))))).)).).))).))))) ( -30.60, z-score = -2.01, R) >droSim1.chr2R 6618405 86 - 19596830 -----------------CUACAUAUAUGUGACAAGAUACGUGCGAGUUGUCAGUU-------GUGAGUGGUCGGUCAUUCUGGCC---AAAACGAUUCUCAGGGUCUAAUGUU -----------------............((((((((.(.((.(((((((((...-------.))).(((((((.....))))))---)...)))))).)).)))))..)))) ( -20.70, z-score = -0.19, R) >consensus __________________U_CAUAUAUGUGACAAGAGACGUGCGAGUUGUCAGUU_______GUAGGGAGCCGGUCAUUCUGGCC__AAAAACGAUUCUCAGGGUCUAAUGUU .............................((((..((((.((.(((((((...................(((((.....))))).......))))))).)).).)))..)))) (-10.42 = -10.67 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:25 2011