| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,615,767 – 2,615,865 |
| Length | 98 |
| Max. P | 0.817497 |
| Location | 2,615,767 – 2,615,865 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.65 |
| Shannon entropy | 0.45477 |
| G+C content | 0.47545 |
| Mean single sequence MFE | -25.09 |
| Consensus MFE | -13.86 |
| Energy contribution | -14.44 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2615767 98 + 23011544 UUAAACACAGAGCUACCAUCAG---UGGGCCAAAA-GCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCCGCCUGAUGAGUUUUUUCCUAU--- ........((((((..((((((---(((((.....-))........((((((...........))))))..........))).)))))))))))).......--- ( -23.90, z-score = -2.05, R) >droSim1.chr2L 2574169 98 + 22036055 UUAAACACAGAGCUACCAUCAG---UGGGCCAAAA-GCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCCGCCUGAUGAGUUUUUUCCUAU--- ........((((((..((((((---(((((.....-))........((((((...........))))))..........))).)))))))))))).......--- ( -23.90, z-score = -2.05, R) >droSec1.super_5 784038 98 + 5866729 UUAAACACAGAGCUACCAUCAG---UGGGCCAAAA-GCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCCGCCUGAUGAGUUUUUUCCUAU--- ........((((((..((((((---(((((.....-))........((((((...........))))))..........))).)))))))))))).......--- ( -23.90, z-score = -2.05, R) >droYak2.chr2L 2605112 98 + 22324452 UUAAACACAGAGCUACCAUCAG---UGGGCCAAAA-GCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCCGCCUGAUGAGUUUUUUCCUAU--- ........((((((..((((((---(((((.....-))........((((((...........))))))..........))).)))))))))))).......--- ( -23.90, z-score = -2.05, R) >droEre2.scaffold_4929 2660312 98 + 26641161 UUAAACACAGAGCUACCAUCAG---UGGGCCAAAA-GCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCCGCCUGAUGAGUUUUUUCCUAU--- ........((((((..((((((---(((((.....-))........((((((...........))))))..........))).)))))))))))).......--- ( -23.90, z-score = -2.05, R) >droAna3.scaffold_12913 437819 94 - 441482 UUAAACACAGAGCUACCAUCA---CUGGGCCAAAAAGCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCAGGCUGAUGAGUUUUCC-------- ........((((((..(((((---((((((......))........((((((...........)))))).........))))..)))))))))))..-------- ( -20.10, z-score = -0.44, R) >dp4.chr4_group4 1930774 97 + 6586962 UUAAACACAGAGCCACCAUCAGGACUGGGCCAAAA-GCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCCGGCUGAUGAGUUUUUUU------- .........(.(((.((....))....))))((((-(.(((((((((((..((.....))....((((......))))...))))))))))).)))))------- ( -24.10, z-score = -1.07, R) >droPer1.super_27 17084 102 + 1201981 --UGAUAUGAAUUUAUGCUACGAGCAUACCCCAAAUACCCCCGAAUAUUUUCCAUUCU-CUUGAGUCACAGUCUCAGCUUCUCUCAGAGAGUUCUUUGGGCACUU --...........(((((.....))))).((((((.......(((....))).(((((-((.(((....(((....)))...))))))))))..))))))..... ( -21.10, z-score = -1.30, R) >droWil1.scaffold_180772 7628822 101 - 8906247 UUAAACACAGAGCUGCCAUCAGCGCUGGG-CCAAAAGCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUUUGGUUGAUGAGUUUUUUUCUGU--- ......(((((((((....))))(((...-.....)))(((((((.((((((...........))))))((((........))))))))))).....)))))--- ( -29.80, z-score = -1.79, R) >droVir3.scaffold_12963 11196530 102 + 20206255 UUAAACACAGAGCUGCCAUCAGCGCUGGGGCCAAAAGCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUUUUGCUGAUGAGUUUUGUUUUUU--- ......((((((((..((((((((.((((((.....))........((((((...........))))))....))))....)))))))))))))))).....--- ( -30.80, z-score = -2.02, R) >droGri2.scaffold_15252 5327191 102 + 17193109 UUAAACACAGAGCUGCCAUCAGCGCUGGGGCCAAAAGCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUUUGGCUGAUGAGUUUUGUUUUUU--- ......((((((((..(((((((((....))(((((..........((((((...........))))))........)))))))))))))))))))).....--- ( -30.57, z-score = -1.45, R) >consensus UUAAACACAGAGCUACCAUCAG__CUGGGCCAAAA_GCAUUCAUUAGCCACGUUUACUGCACCCGUGGCGACCUCCAUUCCGCCUGAUGAGUUUUUUCCUAU___ ........((((((..((((((...((((........)........((((((...........)))))).....)))......)))))))))))).......... (-13.86 = -14.44 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:53 2011