| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,138,353 – 8,138,472 |
| Length | 119 |
| Max. P | 0.803002 |
| Location | 8,138,353 – 8,138,472 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 87.05 |
| Shannon entropy | 0.22474 |
| G+C content | 0.30528 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -14.99 |
| Energy contribution | -15.67 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8138353 119 + 21146708 AAGUAAACUUAAUAGCUAAUACAAAAAUGCCUGUAAUUGGAUAUUAUUUGUAUGUAUUAAGUAUGUAAUUACUUUGGCAUUUCUGCAACGGCCCCCAUUUAGGAAAUGUCAAUAUCUAC .(((((((((((((....(((((((((((((.......)).)))).))))))).))))))))......)))))(((((((((((.....((...)).....)))))))))))....... ( -26.20, z-score = -1.88, R) >droSim1.chr2R 6604904 119 + 19596830 AAGUAAUCUUAAUAGCUAAUACAAAAAUGUCUGUAAUUGGAUAUUUUUUGUAAGUAUUAACUAUGUAAUUACUUUGGCAAUUCUGUCACGGCCUCCAUUUAAGAAAUGCCAAUAUCUAC .((((((....((((.((((((((((((((((......)))))))))).....)))))).))))...))))))((((((.((((.....((...)).....)))).))))))....... ( -28.40, z-score = -3.90, R) >droSec1.super_1 5687162 119 + 14215200 AAGUAAUCUUAAUAGCUAAUACAAAAAUGUCUGUAAUUGGAUAUUUUUUGUAAGUAUUAACUAUGUAAUUACUUUGGCAAUUCUGUCACGGCCCCCAUUUAAGAAAUGCCAAUAUCUAC .((((((....((((.((((((((((((((((......)))))))))).....)))))).))))...))))))((((((.((((.....((...)).....)))).))))))....... ( -28.40, z-score = -3.72, R) >droYak2.chr2R 12327238 118 - 21139217 AAGCAAUCUUGAAAGCCAAUGCAAAAAUGCUUGUAAUUGGAUAUUAUUUGUAAGUAUUAAAUACGUAAUUACUUUCGCAUUGCUGCUACGGGUCGC-UAUAAGAAAUGCCAAUAUCUAC ..(((.(((((...(((...(((..(((((..(((((((.....((((((.......))))))..)))))))....)))))..)))....)))...-..)))))..))).......... ( -21.00, z-score = 0.26, R) >droEre2.scaffold_4845 4933191 118 - 22589142 AAGUAAUCUUAAAAGCUAAUGCAAAAAUGCUUGUAAUUGGAUACUAUUUAUAAGUAUUAAAUACGUAAUUACUUUAGCAUUUCUGCCACGACCUCC-GAUAGGAAAUGCCGAUAUCUAC (((((((.......((....))...(((((((((((.(((...))).))))))))))).........)))))))..((((((((....((.....)-)...)))))))).......... ( -24.80, z-score = -2.59, R) >consensus AAGUAAUCUUAAUAGCUAAUACAAAAAUGCCUGUAAUUGGAUAUUAUUUGUAAGUAUUAAAUAUGUAAUUACUUUGGCAUUUCUGCCACGGCCCCCAUUUAAGAAAUGCCAAUAUCUAC ......((((((..(((...(((.(((((((.(((((((((((((.......)))))).......)))))))...))))))).)))...)))......))))))............... (-14.99 = -15.67 + 0.68)
| Location | 8,138,353 – 8,138,472 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 87.05 |
| Shannon entropy | 0.22474 |
| G+C content | 0.30528 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -15.23 |
| Energy contribution | -14.99 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8138353 119 - 21146708 GUAGAUAUUGACAUUUCCUAAAUGGGGGCCGUUGCAGAAAUGCCAAAGUAAUUACAUACUUAAUACAUACAAAUAAUAUCCAAUUACAGGCAUUUUUGUAUUAGCUAUUAAGUUUACUU ((((((..........(((....)))(((...((((((((((((.(((((......)))))............((((.....))))..))))))))))))...))).....)))))).. ( -26.60, z-score = -2.42, R) >droSim1.chr2R 6604904 119 - 19596830 GUAGAUAUUGGCAUUUCUUAAAUGGAGGCCGUGACAGAAUUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAAAAUAUCCAAUUACAGACAUUUUUGUAUUAGCUAUUAAGAUUACUU .......((((((.((((...((((...))))...)))).))))))(((((((..(((((((((((.....((((((.((........)).)))))))))))))))))...))))))). ( -30.50, z-score = -4.59, R) >droSec1.super_1 5687162 119 - 14215200 GUAGAUAUUGGCAUUUCUUAAAUGGGGGCCGUGACAGAAUUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAAAAUAUCCAAUUACAGACAUUUUUGUAUUAGCUAUUAAGAUUACUU .......((((((.((((...((((...))))...)))).))))))(((((((..(((((((((((.....((((((.((........)).)))))))))))))))))...))))))). ( -30.50, z-score = -4.11, R) >droYak2.chr2R 12327238 118 + 21139217 GUAGAUAUUGGCAUUUCUUAUA-GCGACCCGUAGCAGCAAUGCGAAAGUAAUUACGUAUUUAAUACUUACAAAUAAUAUCCAAUUACAAGCAUUUUUGCAUUGGCUUUCAAGAUUGCUU .........((((..((((...-..........(((....)))((((((......(((.........)))................((((((....))).))))))))))))).)))). ( -21.50, z-score = -0.39, R) >droEre2.scaffold_4845 4933191 118 + 22589142 GUAGAUAUCGGCAUUUCCUAUC-GGAGGUCGUGGCAGAAAUGCUAAAGUAAUUACGUAUUUAAUACUUAUAAAUAGUAUCCAAUUACAAGCAUUUUUGCAUUAGCUUUUAAGAUUACUU ((((....((((...(((....-))).))))..(((((((((((...((((((((.((((((.......)))))))))....))))).)))))))))))..............)))).. ( -26.40, z-score = -2.25, R) >consensus GUAGAUAUUGGCAUUUCUUAAAUGGGGGCCGUGGCAGAAAUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAUAAUAUCCAAUUACAGGCAUUUUUGUAUUAGCUAUUAAGAUUACUU ((((....((((..((((.....))))))))..(((((((((((...((((((..(((..................)))..)))))).)))))))))))..............)))).. (-15.23 = -14.99 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:22 2011