| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,112,249 – 8,112,353 |
| Length | 104 |
| Max. P | 0.656472 |
| Location | 8,112,249 – 8,112,353 |
|---|---|
| Length | 104 |
| Sequences | 13 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.35 |
| Shannon entropy | 0.54620 |
| G+C content | 0.53561 |
| Mean single sequence MFE | -31.46 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.26 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8112249 104 - 21146708 ------CCCAUCAUUCCAGCGGUGGUGACUCGUCGCUCUACUCGGGAAUUUACG-CACGUAAAUUCGGACUGAGCAAGAAGGGUCUACUGCAGAUCGACUACUCAUGCAGU ------.(((((........))))).(((((.((((((...((..((((((((.-...)))))))).))..))))..)).))))).((((((((........)).)))))) ( -31.90, z-score = -1.26, R) >droGri2.scaffold_15112 3551296 89 + 5172618 ---------------------CCAGCGAUUCGUCGCUCUACGCCGGAAUUUAUG-CCCGUAAAUUUGGCUUGAGCAAGAAGGGUCUGCUGCAAAUUGAUUACUCAUGCAGC ---------------------.....(((((.((((((...((((.(((((((.-...)))))))))))..))))..)).))))).((((((...(((....))))))))) ( -27.90, z-score = -1.48, R) >droMoj3.scaffold_6496 13473905 89 - 26866924 ---------------------CAAGCGACUCAUCGCUCUACGCCGGAAUUUAUU-CGCGUAAAUUUGGCUUGAGCAAGAAGGGUCUGCUGCAGAUCGAUUAUUCCUGCAGU ---------------------.....(((((.((((((...((((.(((((((.-...)))))))))))..))))..)).))))).(((((((...........))))))) ( -30.00, z-score = -2.12, R) >droVir3.scaffold_12875 13864538 89 + 20611582 ---------------------CCAGCGACUCAUCGCUCUACGCCGGAAUUUAUG-CGCGUAAAUUUGGCUUGAGCAAGAAGGGUCUGCUACAAAUCGACUACUCCUGCAGC ---------------------..((((((((.((((((...((((.(((((((.-...)))))))))))..))))..)).))))).)))...................... ( -25.30, z-score = -0.94, R) >droWil1.scaffold_180745 564402 107 - 2843958 ---CGCAAUCUCAGAUUGAUUCAGGCGAUUCAUCGCUCUAUUCCGGAAUUUAUU-CACGUAAAUUUGGUUUGAGCAAAAAGGGUCUACUACAGAUUGAUUACUCCUGCAGU ---..((((((......(((((....((....))((((....(((.(((((((.-...))))))))))...)))).....)))))......)))))).............. ( -21.20, z-score = 0.11, R) >droPer1.super_2 5939673 110 + 9036312 GCGAGUCCCCGCACUCCACCGGAGGCGACUCCUCGCUCUACUCGGGAAUUUACG-CGCGUAAAUUCGGCCUGAGCAAGAAGGGUCUGCUCCAGAUCGACUACUCCUGCAGC (((((....(((.((((...)))))))....)))))....(((((((((((((.-...))))))(((..(((((((.((....)))))).)))..)))....))))).)). ( -38.30, z-score = -0.94, R) >dp4.chr3 16873720 110 + 19779522 GCGAGUCCCCGCACUCCACCGGAGGCGACUCCUCGCUCUACUCGGGAAUUUACG-CGCGUAAAUUCGGCCUGAGCAAGAAGGGUCUGCUCCAGAUCGACUACUCCUGCAGC (((((....(((.((((...)))))))....)))))....(((((((((((((.-...))))))(((..(((((((.((....)))))).)))..)))....))))).)). ( -38.30, z-score = -0.94, R) >droAna3.scaffold_13266 5404066 104 - 19884421 ------CCCACUCCAGCGGCGGUGGUGACUCCUCGCUCUACUCGGGAAUUUAUG-CUCGUAAAUUCGGACUGAGCAAGAAGGGUCUGCUCCAGAUCGACUAUUCCUGCAGC ------..((.((((((((.((.(....).)))))))........((((((((.-...))))))))))).)).(((.(((.((((((...)))))).....))).)))... ( -31.90, z-score = -0.27, R) >droYak2.chr2R 12301107 104 + 21139217 ------CCCACCACUCCAGCGGAGGCGACUCUUCGCUCUACUCGGGAAUUUACG-CCCGUAAAUUCGGACUGAGCAAGAAGGGUCUGCUGCAGAUCGACUACUCCUGCAGU ------.......((((...))))..((((((((((((...((..((((((((.-...)))))))).))..))))..)))))))).(((((((...........))))))) ( -37.00, z-score = -2.02, R) >droEre2.scaffold_4845 4905135 104 + 22589142 ------CCCAUCAUUCCAGCGGAGGCGACUCGUCGCUCUACUCGGGAAUUUACG-CCCGUAAAUUCGGACUGAGCAAGAAGGGUCUGCUGCAGAUCGACUACUCCUGCAGU ------(((.((.....(((((((....)))..))))...(((((((((((((.-...))))))))...)))))...)).)))...(((((((...........))))))) ( -34.30, z-score = -1.02, R) >droSec1.super_1 5660907 104 - 14215200 ------CCCAUCAUUCCAGCGGUGGCGACUCGUCGCUCUACUCGGGAAUUUACG-CCCGUAAAUUCGGACUGAGCAAGAAGGGUCUGCUGCAGAUCGACUACUCAUGCAGU ------.(((((........))))).(((((.((((((...((..((((((((.-...)))))))).))..))))..)).))))).((((((((........)).)))))) ( -32.30, z-score = -0.61, R) >droSim1.chr2R_random 2216464 104 - 2996586 ------CCCAUCAUUCCAGCGGUGGCGACUCGUCGCUCUACUCGGGAAUUUACG-CCCGUAAAUUCGGACUGAGCAAGAAGGGUCUGCUGCAGAUCGACUACUCAUGCAGU ------.(((((........))))).(((((.((((((...((..((((((((.-...)))))))).))..))))..)).))))).((((((((........)).)))))) ( -32.30, z-score = -0.61, R) >anoGam1.chr3L 8756571 109 + 41284009 --UCCGGCCACCGCGAUCGCGAUCGCAGCGACCAACGCUAACGUAUGUUACACGCCGCAACAUUUCAGCUUAAGCAAAAAGGGUCUGCUGCAGAUCGACUACUCCUGCAAC --(((((...))).))...((((((((((((((...((...(((.......)))..)).........((....))......)))).))))).))))).............. ( -28.30, z-score = -0.24, R) >consensus ______CCCAUCACUCCAGCGGAGGCGACUCGUCGCUCUACUCGGGAAUUUACG_CCCGUAAAUUCGGACUGAGCAAGAAGGGUCUGCUGCAGAUCGACUACUCCUGCAGU .......................(((((....)))))........((((((((.....)))))))).......(((.((..((((...........))))..)).)))... (-17.62 = -17.26 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:13 2011