| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,093,526 – 8,093,705 |
| Length | 179 |
| Max. P | 0.643180 |
| Location | 8,093,526 – 8,093,705 |
|---|---|
| Length | 179 |
| Sequences | 5 |
| Columns | 179 |
| Reading direction | forward |
| Mean pairwise identity | 79.99 |
| Shannon entropy | 0.34969 |
| G+C content | 0.36506 |
| Mean single sequence MFE | -43.34 |
| Consensus MFE | -20.80 |
| Energy contribution | -21.36 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8093526 179 + 21146708 ACAAUGAAAUGCACUUAUUUAUACCAUUUUUAAUUCGCCAAGGUUACACUGAUGCGAAUAGUGUGACCUUGCUGGCUAAAAGCAGGUUAAACGAAGCAGCACCGCAUUAAAGACUUAUUCAACACAUGGUUGACUUCUUGUAUUACUUACAGUAGCCAUGGAGUUAAAUCCUUGUUUGC ..((((...(((.(((......(((..........((.(((((((((((((.......))))))))))))).))((.....)).)))......)))..)))...))))..((((..(((.(((.((((((((.....(((((.....)))))))))))))..))).)))....)))).. ( -42.80, z-score = -1.06, R) >droEre2.scaffold_4845 4886874 151 - 22589142 ACAACGAAAUGCACUUAUUUAUACCUCAUUUAGUUCGCCAAGGUUACACUACUUCGAAUAGAGUGACCUUGCUAGCUAAAAGAAGGUAAAACGAAGCAGCA-----UUAAAGAUUUAUACAUU----------------------CUUUCAGCAGCCAUGGAGGUACAUUUUU-CUUGC .(((.((((((.((((.....((((((.(((((((.((.((((((((.(((.......))).)))))))))).))))))).).)))))...((..((.((.-----..(((((.........)----------------------))))..)).))..)).)))).)))))).-.))). ( -37.70, z-score = -2.95, R) >droYak2.chr2R 12282274 178 - 21139217 GCAACGAAAUGCACAUAUUUAUACCUUAUUUUAUUUGUCUAGGUUACACUAAUGCGACUAGUGUGACCUUGCUAACUAAAAGAAGGUAAAACGAAGCAGCACCGCAUUAAAGAUUUAUACAUCACAUUGUUGAGUUCUUGUAUUACUUUCAGUAGCCAUAGAGGUAAAUUUUU-CGUGC (((.(((((............((((((.(((((.(((.(.(((((((((((.......))))))))))).).))).)))))((((((((.((((.((......))......((((((.(((......))))))))).)))).))))))))..........))))))....)))-))))) ( -42.19, z-score = -1.91, R) >droSim1.chr2R_random 2184017 173 + 2996586 -CAAUGGCAUGCAUUUAUUUAUACCUUUUUUAAUUCGCCAAGGUUACACUGAUGCGAAUAGUGUGACCUUGCUGGCGAAAAGCAGGCAAAACGAA-----ACCGCAUUAAAGAUUUAUACAUCACAUUGUUGACUUCUUGUAUUACUUACAGUAGUCAUGGAGUUAAAUCUUUGUUUGC -.....((.(((......(((.........)))((((((((((((((((((.......)))))))))))...)))))))..))).))........-----...(((.((((((((((.((.((.((....(((((..(((((.....))))).)))))))))))))))))))))..))) ( -47.20, z-score = -2.91, R) >droSec1.super_1 5638438 174 + 14215200 ACAAUGGCAUGCACUUAUUUAUACCUUUUUUAAUUUGCCAAGGUUACACUGAUGAGAAUAGUGUGACCUUGCUGGCGAAAAGCAGGCACAACGAA-----ACCGCAAUAAAGAUUUAUACAUCACAUUGUUGACUUCUUGUAUUACUUACAGUAGUCAUGGAGUUAAAUAUGUGUUUGC .....((.(((........))).))........((((((((((((((((((.......)))))))))))...)))))))..(((((((((.....-----...(((((...(((......)))..)))))(((((((.((.(((((.....))))))).)))))))....))))))))) ( -46.80, z-score = -2.49, R) >consensus ACAAUGAAAUGCACUUAUUUAUACCUUUUUUAAUUCGCCAAGGUUACACUGAUGCGAAUAGUGUGACCUUGCUGGCUAAAAGCAGGUAAAACGAAGCAGCACCGCAUUAAAGAUUUAUACAUCACAUUGUUGACUUCUUGUAUUACUUACAGUAGCCAUGGAGUUAAAUCUUUGUUUGC ............................(((((((((((((((((((((((.......)))))))))))))...))........(((........................(((......)))....................(((.....))))))...))))))))........... (-20.80 = -21.36 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:11 2011