| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,088,833 – 8,088,924 |
| Length | 91 |
| Max. P | 0.810187 |
| Location | 8,088,833 – 8,088,924 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 79.27 |
| Shannon entropy | 0.36315 |
| G+C content | 0.39589 |
| Mean single sequence MFE | -23.74 |
| Consensus MFE | -13.64 |
| Energy contribution | -14.16 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8088833 91 - 21146708 UUUUUUUUUUCUUGGCGUGGAGCACUAUG-UACUUGAGUGGUGCUUGAGAAAAACAUGGCUUGGCUUUGACUAAAUAUUCUUAGUCAAUGGC .....((((((((......(((((((((.-.......))))))))))))))))).........(((((((((((......)))))))).))) ( -24.30, z-score = -2.16, R) >droEre2.scaffold_4845 4882238 81 + 22589142 ----------UUUGGCGUAGAGCACUAUG-UACUUAAGUGGUGCUUGAGAAAAACAUGGCUUGGCUUUGACUGAAUAUUUUCAGUCAAUGUC ----------...((((((((((.(((((-(.((((((.....))))))....))))))....)))))(((((((....))))))).))))) ( -26.10, z-score = -3.34, R) >droSec1.super_1 5633324 89 - 14215200 --UUUUUUUUCUUGGCGUGGAGCACUAUG-UACUUGAGUGGUGCUUGAGAAAAACAUGGCUUGGCUUUGACUGAAUAUUCUUAGUCAAUGGC --...((((((((......(((((((((.-.......))))))))))))))))).........(((((((((((......)))))))).))) ( -24.40, z-score = -2.06, R) >droSim1.chr2R 6575031 89 - 19596830 --UUUUUUUUCUUGGCGUGGAGCACUAUG-UACUUGAGUGGUGCUUGAGAAAAACAUGGCUUGGCUUUGACUGAAUAUUCUUAGUCAAUGGC --...((((((((......(((((((((.-.......))))))))))))))))).........(((((((((((......)))))))).))) ( -24.40, z-score = -2.06, R) >droAna3.scaffold_13266 5382487 87 - 19884421 --UUCUUUUUUGUCCCUUGGCUAAGGAUGCUGCUCAAGUGGUGCUAUAG-AAAAUAUUUCUUGGCUUCA--UAGGGAAUCUUUGUCAAUGUC --..........(((((.(((((((((.((..(....)..))...(((.-....))))))))))))...--.)))))............... ( -19.50, z-score = -0.61, R) >consensus __UUUUUUUUCUUGGCGUGGAGCACUAUG_UACUUGAGUGGUGCUUGAGAAAAACAUGGCUUGGCUUUGACUGAAUAUUCUUAGUCAAUGGC ................((.((((..((((...((((((.....)))))).....)))))))).)).((((((((......)))))))).... (-13.64 = -14.16 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:08 2011