| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,068,424 – 8,068,531 |
| Length | 107 |
| Max. P | 0.531906 |
| Location | 8,068,424 – 8,068,531 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.32 |
| Shannon entropy | 0.55239 |
| G+C content | 0.60343 |
| Mean single sequence MFE | -39.10 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.69 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8068424 107 + 21146708 ---GCGCUCGUUGGCUCCAAGCGGGCCAUCCAGAUCUUUGCACCCGCCCGCUUUCCGGCCAGCGACGUCCUGG-CA--CCGCUGCCAGCCACCUUUCCACAGGUGGCAGCCAA------ ---(((.(((((((((..((((((((....(((....))).....))))))))...))))))))))))..(((-((--....)))))(((((((......)))))))......------ ( -50.20, z-score = -4.10, R) >droPer1.super_2 5895588 107 - 9036312 ---GCACUGGUCGGGUCCAAACGAGCCAUUCAAAUAUUCGCUCCGGCCCGAUUUCCUGCCGGCGACGUGCUGGUCA--GCAUUGCUU-CCACCUUUCCACAGGUGGCUGGCAA------ ---((...(((((((((.....((((.............)))).)))))))))....((((((.....))))))..--)).(((((.-((((((......))))))..)))))------ ( -39.42, z-score = -1.53, R) >dp4.chr3 16829194 107 - 19779522 ---GCACUGGUCGGGUCCAAACGAGCCAUUCAAAUAUUCGCUCCGGCCCGAUUUCCUGCCGGCGACGUGCUGGUCA--GCAUUGCUU-CCACCUUUCCACAGGUGGCUGGCAA------ ---((...(((((((((.....((((.............)))).)))))))))....((((((.....))))))..--)).(((((.-((((((......))))))..)))))------ ( -39.42, z-score = -1.53, R) >droEre2.scaffold_4845 4862119 107 - 22589142 ---GCGCUCGUUGGCUCCAAGCGGGCCAUCCAGAUCUUUGCACCCGCCCGCUUUCCGGGCAGUGACGUCUUGG-CA--CCGCUGCCAGCCACCUUUCCACAGGUGGCAGCCAA------ ---.......((((((...(((((((((...((((.....(((..(((((.....))))).)))..)))))))-).--)))))....(((((((......)))))))))))))------ ( -48.30, z-score = -3.01, R) >droYak2.chr2R 12257701 107 - 21139217 ---GCGCUCGUUGGCUCCAAGCGGGCCAUCCAGAUCUUUGCACCCGCCCGCUUUCCGGCCAGCGACGUCCUGG-CC--CCGCUGCCAGCCACCUUUCCACAGGUGGCAGCCAA------ ---(((.(((((((((..((((((((....(((....))).....))))))))...))))))))))))..(((-(.--.....))))(((((((......)))))))......------ ( -48.90, z-score = -3.70, R) >droSim1.chr2R_random 2154668 107 + 2996586 ---GCGCUCGUUGGCUCCAAGCGGGCCAUCCAAAUUUUUGCACCCGCCCGCUUUCCGGCCAGCGACGUCCUGG-CA--CCGCUGCCAGCCACCUUUCCACAGGUGGCAGCCAA------ ---(((.(((((((((..((((((((....(((....))).....))))))))...))))))))))))..(((-((--....)))))(((((((......)))))))......------ ( -50.50, z-score = -4.60, R) >droMoj3.scaffold_6496 13423556 107 + 26866924 ---GCACUUGUUGGCUCCAAGAAAUCCAUCAAAAUCUUUGCGCCCGCCCGGUUUCCAGGCCACGGUAUCUUAAAC---AACAUACCUGCAACCUUUCCGGCCGUGGCCAAAGA------ ---....((.(((....))).))...........((((((.(((((.((((.......((...(((((.((....---)).))))).)).......)))).)).)))))))))------ ( -28.34, z-score = -1.17, R) >droSec1.super_1 5612988 107 + 14215200 ---GCGCUCGUUGGCUCCAAGCGGGCCAUCCAAAUUUUUGCACCCGCCCGCUUUCCGGCCAGCGACGUCCUGG-CA--CCGCUGCCAGCCACCUUUCCACAGGUGGCAGCCAA------ ---(((.(((((((((..((((((((....(((....))).....))))))))...))))))))))))..(((-((--....)))))(((((((......)))))))......------ ( -50.50, z-score = -4.60, R) >droWil1.scaffold_180745 505911 110 + 2843958 GCACAAUUGGUUGGCUCCAAAAGGGCCAUCAAAAUCUUCGCACCCGCCCGUUUCCCGGCCAGUGACGUUCUAG-CA--AAGAUUCCGGCCACCUUUCCUCAGGUGGCUCAAAA------ ((....(((((.(((((.....))))))))))......(((((..(((........)))..))).)).....)-).--........((((((((......)))))))).....------ ( -33.60, z-score = -1.59, R) >droGri2.scaffold_15112 3497793 116 - 5172618 ---GCACUCGUCGGCUCCAAGAAAUCAAUCAAAAUCUACGCGCCCGCCCGCUUUCCUGGUACCUCGACACUGAACAUCAACAUCUCGGCAACAUUUCCCCAGGUUGUUGAUCACCAAAA ---......(((((..(((.((((...............(((......))))))).)))....))))).......((((((((((.((.........)).))).)))))))........ ( -19.66, z-score = 0.17, R) >droVir3.scaffold_12875 13804390 107 - 20611582 ---GCUCUCGUUGGCUCCAAGAAGUCUAUUAAAAUCUUUGCGCCCGCACGUUUUCCUGGCAGCGCCAUAUUAAAA---AACAUACCGGCCACUUUUCCCCCGCUGGUACAGAA------ ---......((.(((.(.((((............)))).).))).))..(((((..((((...))))......))---))).(((((((............))))))).....------ ( -20.50, z-score = 0.55, R) >droAna3.scaffold_13266 5359690 104 + 19884421 ---GCUCUCGUUGGCUCGAAACGGGCCAUCCAGAUCUUCGCACCCGCCCGCUUUCCGGCCAGCGACGUCCUGA-CC--CCGUUGCCCGCCACCUUCACACAGGUGGCCAG--------- ---....(((((((((.(((((((((......(.....)......))))).)))).)))))))))........-..--.........(((((((......)))))))...--------- ( -39.90, z-score = -2.97, R) >consensus ___GCACUCGUUGGCUCCAAGCGGGCCAUCCAAAUCUUUGCACCCGCCCGCUUUCCGGCCAGCGACGUCCUGG_CA__CCGCUGCCAGCCACCUUUCCACAGGUGGCAGCCAA______ .....................................((((..(((.........)))...))))......................(((((((......)))))))............ (-10.26 = -10.69 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:07 2011