| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,612,736 – 2,612,800 |
| Length | 64 |
| Max. P | 0.629311 |
| Location | 2,612,736 – 2,612,800 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 79.96 |
| Shannon entropy | 0.37947 |
| G+C content | 0.41730 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -8.94 |
| Energy contribution | -8.88 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2612736 64 - 23011544 UUGUUUAGAUAGUAAUC--CCUGCUAAGAGAAGCUUAAGGAAGUUGCUGUCAAUGAGGUGACGUGA .......(((((((((.--((((((......)))...)))..))))))))).....(....).... ( -15.50, z-score = -1.84, R) >dp4.chr4_group4 1925390 64 - 6586962 UUCUUCGGUAACUAAUC--CAAGCUAAGAAAAGCUUAGAGGUAGUUCUUCUAUUAAGCCGGGGAGA ((((((((((((((.((--.(((((......))))).))..)))))..........))))))))). ( -19.20, z-score = -1.87, R) >droSim1.chr2L 2571186 66 - 22036055 GUGUUUAGAUGGUAAUCCCCCUGCUAAGAGAAGCUUAAGGAAGUUGCUGUCAAUAGGGAGACGUGA .......(((((((((..((..(((......)))....))..)))))))))..((.(....).)). ( -15.90, z-score = -1.00, R) >droSec1.super_5 781030 66 - 5866729 GUGUUUAGAUAGUAAUCCCCCUGCUAAGAGAAGCUUAAGGAAGUUGCUGUCAAUAAGGAGACGUGA .......(((((((((..((..(((......)))....))..))))))))).....(....).... ( -16.50, z-score = -2.27, R) >droYak2.chr2L 2601889 64 - 22324452 UUGUUUAGAUGGUAAUC--CUUGCUAAGAGAAGCUUAAGGAUGUUGCUGUCAAUAAGCAGACGUGA (((((((((((((((((--((((((......)))..))))))..)))))))..)))))))...... ( -17.40, z-score = -2.21, R) >droEre2.scaffold_4929 2657323 64 - 26641161 CUGCUUAGGUAGUAAUC--CUUGCUAAGAGAAGCUUAAGGAAGUUGCUGUCAAUAAGCAGACGUGA ((((((((..(((((((--((((((......)))..)))))..)))))..)..)))))))...... ( -20.60, z-score = -2.61, R) >consensus UUGUUUAGAUAGUAAUC__CCUGCUAAGAGAAGCUUAAGGAAGUUGCUGUCAAUAAGCAGACGUGA .......(((((((((...((((((......)))...)))..)))))))))............... ( -8.94 = -8.88 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:52 2011