| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,053,965 – 8,054,018 |
| Length | 53 |
| Max. P | 0.569167 |
| Location | 8,053,965 – 8,054,018 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 79.29 |
| Shannon entropy | 0.36128 |
| G+C content | 0.36955 |
| Mean single sequence MFE | -7.62 |
| Consensus MFE | -4.74 |
| Energy contribution | -4.88 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8053965 53 + 21146708 UAAGUCUCGACCAAGUUC----CACUCGAGAUACUUUCAAUAAACAAU-----AAUAAUGCG ...(((((((........----...)))))))................-----......... ( -7.20, z-score = -2.11, R) >droWil1.scaffold_181141 2057895 62 - 5303230 UGAGUGUCUGGCAUGUUUGCCUCACUUGAGAUACAGAUAACAGUCAUUUAAAGAAUAUUGCG ((((((.(((...((((((.(((....)))...)))))).))).))))))............ ( -13.70, z-score = -1.04, R) >droEre2.scaffold_4845 4848996 53 - 22589142 UAAGUCUCGGCCAUGUUC----CACUCGAGACACUUCCAAAAAACAAU-----AAUAUUGCG ...(((((((........----...)))))))................-----......... ( -8.50, z-score = -2.17, R) >droYak2.chr2R 12241942 53 - 21139217 GAAGUCUCGACCAUAUUC----CACUCAAGAUACUUUCAAAAAACAAU-----AAUAAUGCG (((((.((..........----.......)).)))))...........-----......... ( -1.93, z-score = -0.03, R) >droSec1.super_1 5599091 53 + 14215200 UUAGUCUCGACCAAGUUC----CACUCGAGAUACUUUCAAUAAACAAU-----AAUAAUGCG ...(((((((........----...)))))))................-----......... ( -7.20, z-score = -1.98, R) >droSim1.chr2R 6562244 53 + 19596830 UAAGUCUCGACCAAGUUC----CACUCGAGAUACUUUCAAUAAACAAU-----AAUAAUGCG ...(((((((........----...)))))))................-----......... ( -7.20, z-score = -2.11, R) >consensus UAAGUCUCGACCAAGUUC____CACUCGAGAUACUUUCAAUAAACAAU_____AAUAAUGCG ...(((((((...............))))))).............................. ( -4.74 = -4.88 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:02 2011