| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,046,370 – 8,046,463 |
| Length | 93 |
| Max. P | 0.998582 |
| Location | 8,046,370 – 8,046,463 |
|---|---|
| Length | 93 |
| Sequences | 13 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.06 |
| Shannon entropy | 0.50366 |
| G+C content | 0.45332 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -26.64 |
| Energy contribution | -24.82 |
| Covariance contribution | -1.82 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.41 |
| SVM RNA-class probability | 0.998582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8046370 93 - 21146708 --------------GGGCAUUUUGGGUGUGUGAUUUGUAGCAAAGUGA--UAUGUAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCAAAGAUGAUCUGCGAAAUACA--- --------------(((((((((.((((((.(.((((((((((.((((--(.........))--)))....)))))))))).).)))))).)))))).)))..........--- ( -28.10, z-score = -2.25, R) >anoGam1.chr2L 10005160 100 + 48795086 --------------GGACAUUGCCGGUGUGUGUUUUGUGACAAUGAGAUUUAAUAGUUUAAGUUCAUCCCCUUGUUGCAAACCUCACGCUGGCGGUGUUUCCGACUGACAUCGA --------------((((((((((((((((.(.((((..(((((((.((((((....)))))))))).....)))..)))).).)))))))))))))))).(((......))). ( -37.90, z-score = -4.38, R) >droGri2.scaffold_15245 136232 93 + 18325388 --------------GUGCAUUUUGGGCGUGUGAUUUGUGGCAAAGUGA--UGAGC-U-UGAUUCCAUCCCCUUGUUGCAAACCUCACGCCGAAGGUGGCGCAUCUAAGCAA--- --------------(((((((((.((((((.(.((((..((((.(.((--((...-.-......)))).).))))..)))).).)))))).))))).))))..........--- ( -36.60, z-score = -3.06, R) >droMoj3.scaffold_6496 6364096 94 - 26866924 --------------GCGCAUUUUGGUCGUGUGAUUUGUGGCAAAGUGA--UGAGC-UAUGAUUCCAUCCCCUUGUUGCAAACCUCACGCUGAAGGUGACGCAUAGCAGCAA--- --------------(((((((((.(.((((.(.((((..((((.(.((--((...-........)))).).))))..)))).).)))).).)))))).)))..........--- ( -30.00, z-score = -1.33, R) >droVir3.scaffold_12875 771109 94 + 20611582 --------------GCGCAUUUUGGGCGUGUGAUUUGUGGCAAAGUGA--UGAGC-UUGGAUUCCAUCCCCUUGUUGCAAACCUCACGCCAAAGGUGGCGCAUUUAACCAG--- --------------(((((((((.((((((.(.((((..((((.(.((--((...-........)))).).))))..)))).).)))))).))))).))))..........--- ( -36.30, z-score = -2.74, R) >droWil1.scaffold_181141 2048755 105 + 5303230 UUAAAACGAAUUGUGGGCAUUUCGGGCGUGUGAUUUGUAGCAAAGUGA--UAUGUACUUGAU--AAUCCCCUUGUUGCAAACCUCACGCCGGAAAGAUGUCUCCAAAUA----- ..........(((..((((((((.((((((.(.((((((((((.(.((--(.(((.....))--)))).).)))))))))).).)))))).))..))))))..)))...----- ( -36.20, z-score = -4.24, R) >droPer1.super_2 590082 105 - 9036312 -GAAUCCAGACUGUGGACAUUUUGGGUGUGUGAUUUGUGGCAAAGUGA--UAUGCAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCAAAGUUGAAUCCCACACCUA---- -...((((.....)))).....((((((((.(((((.((((...((((--..((((......--...........))))....)))))))).....))))).))))))))---- ( -27.83, z-score = -0.90, R) >dp4.chr3 405644 105 - 19779522 -GAAUCCAGACUGUGGACAUUUUGGGUGUGUGAUUUGUGGCAAAGUGA--UAUGCAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCAAAGUUGAAUCCCACACCUA---- -...((((.....)))).....((((((((.(((((.((((...((((--..((((......--...........))))....)))))))).....))))).))))))))---- ( -27.83, z-score = -0.90, R) >droAna3.scaffold_13266 17304609 95 + 19884421 --------------GGACAUUUUGGGUGUGUGAUUUGUGGCAAAGUGA--UAGGUAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCCAAGGUGCUUUCCAACGGCAACA- --------------((((((((((((((((.(.((((..((((.(.((--(.(((.....))--)))).).))))..)))).).)))))))))))))...)))...(....).- ( -38.00, z-score = -3.64, R) >droEre2.scaffold_4845 4841288 93 + 22589142 --------------GGGCAUUUUGGGUGUGUGAUUUGUAGCAAAGUGA--UAUGUAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCGAAGGUGACCUGCGAAAUACA--- --------------(((((((((.((((((.(.((((((((((.((((--(.........))--)))....)))))))))).).)))))).)))))).)))..........--- ( -32.40, z-score = -3.11, R) >droYak2.chr2R 12234260 93 + 21139217 --------------GGGCAUUUUGGGUGUGUGAUUUGUAGCAAAGUGA--UAUGUAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCAAAGGUGACCUGCGAAAUACA--- --------------(((((((((.((((((.(.((((((((((.((((--(.........))--)))....)))))))))).).)))))).)))))).)))..........--- ( -30.30, z-score = -2.44, R) >droSec1.super_1 5591428 93 - 14215200 --------------GGGCAUUUUGGGUGUGUGAUUUGUAGCAAAGUGA--UAUGUAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCAAAGAUGAUCUGCGAAAUACA--- --------------(((((((((.((((((.(.((((((((((.((((--(.........))--)))....)))))))))).).)))))).)))))).)))..........--- ( -28.10, z-score = -2.25, R) >droSim1.chr2R_random 2089217 93 - 2996586 --------------GGGCAUUUUGGGUGUGUGAUUUGUAGCAAAGUGA--UAUGUAUUUGAU--CAUCCCCUUGUUGCAAACCUCACGCCAAAGAUGAUCUGAGAAAUACA--- --------------(((((((((.((((((.(.((((((((((.((((--(.........))--)))....)))))))))).).)))))).)))))).)))..........--- ( -28.10, z-score = -2.44, R) >consensus ______________GGGCAUUUUGGGUGUGUGAUUUGUGGCAAAGUGA__UAUGUAUUUGAU__CAUCCCCUUGUUGCAAACCUCACGCCAAAGGUGACCCGCAAAAUAAA___ ..............(((((((((.((((((.(.((((((((((.(.((......(....)......)).).)))))))))).).)))))).)))))).)))............. (-26.64 = -24.82 + -1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:01 2011