| Sequence ID | dm3.chr2R |
|---|---|
| Location | 8,024,956 – 8,025,051 |
| Length | 95 |
| Max. P | 0.947541 |
| Location | 8,024,956 – 8,025,051 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 58.95 |
| Shannon entropy | 0.65664 |
| G+C content | 0.37514 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -10.00 |
| Energy contribution | -8.00 |
| Covariance contribution | -2.00 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 8024956 95 - 21146708 -CAGUCAAGUCGCCCACCC---AGCUUACAAAUGUGAAUAAAUGGCGCAAAGUAGGGUCUUUUAUGUAUAUUUGUACUUAUUACUUACAGACAGUGGGU -..........((((((..---..((((((((((((.(((((.(((.(......).))).))))).))))))))))............))...)))))) ( -22.70, z-score = -0.91, R) >droAna3.scaffold_13266 17283610 83 + 19884421 CUGGUGAAAUGGCCCACAC---AACAAAUAAAUUGGAAUAAAUGGUCAGAG---------CUUUGAUUUUUUUGAAUUAAG----GAUGAUCUGUGGGU ...........(((((((.---..(((.....)))........(((((...---------(((((((((....))))))))----).)))))))))))) ( -22.20, z-score = -2.52, R) >droSec1.super_1 5570072 92 - 14215200 -CAGUCAAAUUGCCCACAUGUGAAUAAAUGGCGCAAAGUAGGGUCUUUUAUGUA------UAUACAUACAUAUGUACUUAUUUCUUACAGACAGUGGGU -..........((((((.((((((((((.(((.(......).))).)))))(((------((((......))))))).......)))))....)))))) ( -22.20, z-score = -1.39, R) >droSim1.chr2R 6538311 92 - 19596830 -CAGUCAAAUCGCCCACCCACCAGCUUAUAAAUGUGAAUAAAUGGCGCAAAGUA------UGUAUAUAAUUAUGUACUUAUUCCUUACAGACAGUGGGU -..........((((((.(.(((..((((........)))).))).)..(((((------((((......)))))))))..............)))))) ( -18.70, z-score = -0.88, R) >consensus _CAGUCAAAUCGCCCACAC___AACAAAUAAAUGUGAAUAAAUGGCGCAAAGUA______UUUAUAUAUAUAUGUACUUAUU_CUUACAGACAGUGGGU ...........((((((...............((((.........)))).............((((......)))).................)))))) (-10.00 = -8.00 + -2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:17:00 2011