Locus 3803

Sequence ID dm3.chr2R
Location 8,020,056 – 8,020,110
Length 54
Max. P 0.874252
window5208

overview

Window 8

Location 8,020,056 – 8,020,110
Length 54
Sequences 7
Columns 57
Reading direction reverse
Mean pairwise identity 84.10
Shannon entropy 0.31337
G+C content 0.34062
Mean single sequence MFE -9.92
Consensus MFE -6.89
Energy contribution -7.57
Covariance contribution 0.68
Combinations/Pair 1.29
Mean z-score -1.96
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.01
SVM RNA-class probability 0.874252
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 8020056 54 - 21146708
AAAAUGCUCUUCUCUGCUAAAUUAUAAAUAGCCAAGGGAGUCGCAUAAACAACA---
...((((..((((((((((.........))))..))))))..))))........--- ( -11.40, z-score =  -2.53, R)
>droSim1.chr2R 6532678 54 - 19596830
AAAAUGCUCUUCUCUGCUAAAUUAUAAAUAGCCAAGGGAGUCGCAUAAACAACA---
...((((..((((((((((.........))))..))))))..))))........--- ( -11.40, z-score =  -2.53, R)
>droSec1.super_1 5564928 54 - 14215200
AAUAUGCUCUUCUCUGCUAAAUUAUAAAUAGCCAAGGGAGUCGCAUAAACAACA---
..(((((..((((((((((.........))))..))))))..))))).......--- ( -12.80, z-score =  -3.03, R)
>droYak2.chr2R 12207923 53 + 21139217
-AAAUGCUCUUCUCUGCUAAAUUAUAAAUAGCCAAGGGAGUCGCAUAAACAACC---
-..((((..((((((((((.........))))..))))))..))))........--- ( -11.40, z-score =  -2.54, R)
>droEre2.scaffold_4845 4814502 53 + 22589142
-AAAUGCUCUUCUCUGCUAAAUUAUAAAUAGCCAAGGGAGUCGCAUAAACAACC---
-..((((..((((((((((.........))))..))))))..))))........--- ( -11.40, z-score =  -2.54, R)
>droAna3.scaffold_13266 17276156 54 + 19884421
AAAAUGCUUUUUUCUGCUAAAUUAUAAAUAGCCAAGGGAGACACAUAAACAACA---
...(((..(((..((((((.........))))..))..)))..)))........--- (  -7.00, z-score =  -0.88, R)
>droMoj3.scaffold_6496 18781868 54 - 26866924
UAAAUGCUUUGCUCUGC---AAUAUAAAUAACUAGAGAGACUGUAAAUAAAACAACA
....(((....(((((.---............))))).....)))............ (  -4.02, z-score =   0.36, R)
>consensus
AAAAUGCUCUUCUCUGCUAAAUUAUAAAUAGCCAAGGGAGUCGCAUAAACAACA___
...((((..((((((((((.........))))..))))))..))))........... ( -6.89 =  -7.57 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:59 2011