| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,998,295 – 7,998,408 |
| Length | 113 |
| Max. P | 0.698844 |
| Location | 7,998,295 – 7,998,408 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.58 |
| Shannon entropy | 0.29839 |
| G+C content | 0.39413 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -18.86 |
| Energy contribution | -18.82 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7998295 113 + 21146708 GCACUUUUUGUAAGCCCAUGAAAAGUUCAUUUAUUUAA----CUCGUCGCCGCGACAUGCGUCAUUUGCAAUUGGCGACGUGACGAAGAACCAAUUAAAAUGCGCAGGUUUUCAGUA (.((((((..(......)..)))))).)..........----(.((((((((.....((((.....))))..)))))))).)((..((((((..............))))))..)). ( -26.84, z-score = -0.35, R) >droSim1.chr2R_random 2111914 92 + 2996586 -------------------GAAAAGUUCAUUUAUUUAU----CUCGUCGCC--GACAUGCGUCAUUUGCAAUUGGCGACGUGACGAAGAACCAAUUAAAAUGCGCAGGUUUUCAGUA -------------------(((((((.(((((.((..(----(.(((((((--((..((((.....)))).))))))))).))..))..........))))).))...))))).... ( -25.10, z-score = -1.78, R) >droSec1.super_1 5546734 92 + 14215200 -------------------GAAAAGUUCAUUUAUUUAU----CUCGUCGCC--GACAUGCGUCAUUUGCAAUUGGCGACGUGACGAAGAACCAAUUAAAAUGCGCAGGUUUUCAGUA -------------------(((((((.(((((.((..(----(.(((((((--((..((((.....)))).))))))))).))..))..........))))).))...))))).... ( -25.10, z-score = -1.78, R) >droYak2.chr2R 12186054 110 - 21139217 UCAAUUUUU-UAAGCCCAUAAAAAGUUUAUUUAUUUAU----CUCGUUGCC--AGCAUGCGUCAUUUGCAAUUGGCGACGUGACGAUGAACCAAUUAAAAUACACAGGUUUCCAGUA ..(((((((-((......))))))))).......(..(----(.(((((((--((..((((.....)))).))))))))).))..).(((((..............)))))...... ( -23.54, z-score = -1.90, R) >droEre2.scaffold_4845 4792696 115 - 22589142 GCAUUUUUUGUAAGCCCAUAAAAAGUUCAUUUAUUUAUUUAUCUCGUUGCC--AACAUGCGUCAUUUGCAAUUGGCGACGUGACGAAGAACCAAUUAAAGCACACAGGUUUUCAGUU (.(((((((((......))))))))).).........((..((.(((((((--((..((((.....)))).))))))))).))..))(((((..............)))))...... ( -26.04, z-score = -2.08, R) >consensus _CA_UUUUU_UAAGCCCAUGAAAAGUUCAUUUAUUUAU____CUCGUCGCC__GACAUGCGUCAUUUGCAAUUGGCGACGUGACGAAGAACCAAUUAAAAUGCGCAGGUUUUCAGUA ..........................................(.(((((((......((((.....))))...))))))).)((..((((((..............))))))..)). (-18.86 = -18.82 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:57 2011