| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,612,497 – 2,612,613 |
| Length | 116 |
| Max. P | 0.813262 |
| Location | 2,612,497 – 2,612,613 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.91 |
| Shannon entropy | 0.38163 |
| G+C content | 0.35801 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -15.60 |
| Energy contribution | -16.68 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2612497 116 + 23011544 GGCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGAAUCAUGUUUUACACCGAUUUGUUGAAUUGAAAAAAAUCGCCAUUGAUUGGAAACAAAAUAGUGUGAAA---- (((.((.((((((((.(((((..(((....(((..(((((((.......)))))))..))))))..))))).)..))))))).)).))).....(((....)))............---- ( -28.80, z-score = -2.10, R) >droSim1.chr2L 2570929 114 + 22036055 GUCAAUAUUUUUUAUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUUUACACCGAUUUGUUGAUU--GAAAAAAUCGCCAUUGAUUGGAAAUAAAAUGGUGUGAAA---- .((((((((((((...((....))))))))))))))((((((.......))))))(((((((((.((((((((((--.....)))).(((.....))).)))))).))))))))).---- ( -32.00, z-score = -2.84, R) >droSec1.super_5 780775 112 + 5866729 GGUAAUAUUUUU-AUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUGUACACCGAUUUGUUGAUU---GAAAAAUCGCCAUUGAUUGGAAAUAAAAUGGUGUGAAA---- ..((((((((((-...((....)).))))))))))(((((((.......))))))).(((((((.((((((((((---....)))).(((.....))).)))))).)))))))...---- ( -31.50, z-score = -2.94, R) >droYak2.chr2L 2601628 98 + 22324452 -------------------AAACCGGAAAGUGGUGGACAUGAAUACGGAUCAUGUUUCACACCUAUUUGUUGAUG---AAAAAAAUGCCAUUGAUUGGAAAUAAAACGGUGAGAAAAACA -------------------..((((....((((..(((((((.......))))))))))).((.....((..(((---..........)))..)).))........)))).......... ( -19.20, z-score = -0.68, R) >droEre2.scaffold_4929 2657071 97 + 26641161 -------------------AAGCCGGAAAAUGGUAGACAUGAAUACGGAUCGUGUUUUACACCGAUUUGUUGAUG----AAAAAAGCCCAUCGAUUGGAAAUAAGAUAGGUAGAAAAACU -------------------..((((.....))))...(((.(..((((((((((.....)).))))))))).)))----......(((.(((...(....)...))).)))......... ( -17.60, z-score = -0.67, R) >consensus G__AAUAUUUUU_AUGGGCAAGCCGGAAAGUGUUGGACAUGAAUACGGAUCAUGUUUUACACCGAUUUGUUGAUU___AAAAAAUCGCCAUUGAUUGGAAAUAAAAUGGUGUGAAA____ ................((((((.(((....(((.((((((((.......)))))))).)))))).))))))..............(((((((............)))))))......... (-15.60 = -16.68 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:51 2011