| Sequence ID | dm3.chr2L |
|---|---|
| Location | 301,073 – 301,164 |
| Length | 91 |
| Max. P | 0.595610 |
| Location | 301,073 – 301,164 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 73.88 |
| Shannon entropy | 0.42996 |
| G+C content | 0.51663 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -12.06 |
| Energy contribution | -10.98 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 301073 91 - 23011544 GAUAAGC-GUUGCUAUCUUUAGC-GAGGUGCUAACCUUAUCUAGAGGCCU-CCUUGCCUCCU--------ACCAGUUG-------GCACUUCCCCAAGCUGUCACUUGU ((((.((-...((((....))))-(((((((((((........(((((..-....)))))..--------....))))-------))))))).....))))))...... ( -32.34, z-score = -3.90, R) >droSim1.chr2L 319288 91 - 22036055 GAUAAGC-GUUGCUAUCUUUAGC-GAGGUGCUAACCUUAUCUAGAGGCCU-CCUUGCCUCCU--------UCCACUUG-------GCACUUCCCCAAGCUGUCAUUUGU ((((.((-...((((....))))-((((((((((.........(((((..-....)))))..--------.....)))-------))))))).....))))))...... ( -29.29, z-score = -3.50, R) >droYak2.chr2L 295459 106 - 22324452 GAUAAGC-GUUGCUAUCUUUAGC-GAGGCGCUAACCUUAUCUAGAGGCCU-CCCUGCCUCCUUGCCUCCGCCCACUUGCCGCUUCCCACUUCCCCAAGCUGUCACUCGC ((((.((-...((((....))))-((((((.............(((((..-....))))).........((......))))))))............))))))...... ( -25.10, z-score = -1.18, R) >droEre2.scaffold_4929 354000 91 - 26641161 GAUAAGC-GCUGCUAUCUUUAGC-GGGGCGCUAACCUUAUCUAGAGGCCU-CCUUGCCUCCU--------CCCACUUG-------CCACUUCCCCAAGCUGUCACCCGC ((((.((-...((((....))))-((((.((............(((((..-....)))))..--------.......)-------).....))))..))))))...... ( -23.30, z-score = -0.72, R) >droAna3.scaffold_12943 68830 101 + 5039921 GAUAAGCGGCAGCUAUCUUCGGCAAAGGCGCUAACCUUAUCUGGGGCUUUAUUCCGCUUCCU------CUAUCACUCG--GUUAUUUUUUUUUCGCAAUUUUUAUUCUU (((((((((..(((......))).(((((.(((........))).)))))...)))))....------.)))).....--............................. ( -18.10, z-score = 0.06, R) >consensus GAUAAGC_GUUGCUAUCUUUAGC_GAGGCGCUAACCUUAUCUAGAGGCCU_CCUUGCCUCCU________ACCACUUG_______CCACUUCCCCAAGCUGUCACUCGU ((((.((....))))))..(((..((((......))))..)))(((((.......)))))................................................. (-12.06 = -10.98 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:29 2011