| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,963,422 – 7,963,542 |
| Length | 120 |
| Max. P | 0.855793 |
| Location | 7,963,422 – 7,963,542 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.07 |
| Shannon entropy | 0.25150 |
| G+C content | 0.42311 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -23.88 |
| Energy contribution | -27.68 |
| Covariance contribution | 3.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7963422 120 + 21146708 CAUGACCUGAGGGGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCAAGGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCUCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUGGAAG (((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))).... ( -36.70, z-score = -2.47, R) >droSim1.chr2R 6500510 120 + 19596830 CAUGACCUGAGGGGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCAAGGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCUCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUGGAAG (((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))).... ( -36.70, z-score = -2.47, R) >droSec1.super_1 5512575 90 + 14215200 CAUGACCUGAGGGGCAUUUCGGUUGAUCUGUUUAGAAGUUUAAUUGCGCAAGGCGC------------------------------AAGGCUUUUAAUAUUUAAUAUCGAAUCAUGGAAG (((((((....))....((((((........((((((((....((((((...))))------------------------------)).))))))))........))))))))))).... ( -24.39, z-score = -2.15, R) >droYak2.chr2R 12149729 119 - 21139217 CAUGACCUGAGGAGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCA-GGCGCCGGCAAACAGGAUGUUGAAAUAGAGCCCUCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUGGUAG (((((.(((.((.((..((((((((((((.......))))))))))))..-.)).))......)))(((((((((..((((((.....)))))).....)))))))))...))))).... ( -35.40, z-score = -2.17, R) >droEre2.scaffold_4845 4754950 119 - 22589142 CAUGACCUGAGGAGCAUUGCGGUUGAGCUGCUUGGAAGUUUAAUUGAGCA-GGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCCUCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUGGAAG (((((.....((.((.((((.((((((((.......))))))))...)))-))).)).........(((((((((..((((((.....)))))).....)))))))))...))))).... ( -34.20, z-score = -1.54, R) >consensus CAUGACCUGAGGGGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCAAGGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCCCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUGGAAG (((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))).... (-23.88 = -27.68 + 3.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:54 2011