| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,960,116 – 7,960,214 |
| Length | 98 |
| Max. P | 0.525983 |
| Location | 7,960,116 – 7,960,214 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 80.79 |
| Shannon entropy | 0.33281 |
| G+C content | 0.49620 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -16.56 |
| Energy contribution | -17.64 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7960116 98 + 21146708 -GAGUUGUCAAGGCGAUUUAAUGGUGUGCAAUUCUAAGAAACGCAAUGCGCGUU-UUCGAAUCCCAUGUCCAAUGUCCCAUGCUCCCAGCUCACAGCUCA------- -(((((((...((.(((....(((((((..((((...(((((((.....)))))-)).))))..)))).)))..)))))..((.....))..))))))).------- ( -28.30, z-score = -2.46, R) >droAna3.scaffold_13266 17216487 97 - 19884421 GGAGUUUUGAAGGCGAUUUAAUGGCGUGCAAUUCUAAGAAACGCAAUGCGCGCUACUCGGGACCUGAGACCAGAGUCCUCCAGCUC---UCCAGUGCUCC------- (((((.(((.((((.......(((((((((................)))))))))...((((((((....))).)))))...)).)---).))).)))))------- ( -33.89, z-score = -1.90, R) >droEre2.scaffold_4845 4751732 97 - 22589142 -GUGUUCUCAAGGCGAUUUAAUGGUGUGCAAUUCUAAGAAACGCAAUGCGCGUU-UUCGAUUCCCAUGUCCCAUGUCCCA-GCUCACAGCUCACAGCUCA------- -(((..((...(((......((((.(((....((...(((((((.....)))))-)).))....)))...))))......-)))...))..)))......------- ( -19.00, z-score = 0.52, R) >droSec1.super_1 5509356 104 + 14215200 -GAGUUGUCAAGGCGAUUUAAUGGUGUGCAAUUCUAAGAAUCGCAAUGCGCGUU-UUCGAAUCCCACGUCCAAUGUCCCAUG-UCCCAGCUCACAGCUCACAGCUCA -(((((((...((.(((....(((((((..((((.((((..(((.....)))))-)).))))..)))).)))..)))))...-....(((.....))).))))))). ( -28.10, z-score = -2.00, R) >droSim1.chr2R 6497261 104 + 19596830 -GAGUUGUCAAGGCGAUUUAAUGGUGUGCAAUUCUAAGAAACGCAAUGCGCGUU-UUCGAAUCCCACGUCCAAUGUCCCAUG-UCCCAGCUCACAGCUCACAGCUCA -(((((((...((.(((....(((((((..((((...(((((((.....)))))-)).))))..)))).)))..)))))...-....(((.....))).))))))). ( -31.60, z-score = -3.07, R) >consensus _GAGUUGUCAAGGCGAUUUAAUGGUGUGCAAUUCUAAGAAACGCAAUGCGCGUU_UUCGAAUCCCACGUCCAAUGUCCCAUG_UCCCAGCUCACAGCUCA_______ .(((((((((.((.(((....(((((((..((((.....(((((.....)))))....))))..)))).)))..))))).))..........)))))))........ (-16.56 = -17.64 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:53 2011