| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,958,678 – 7,958,783 |
| Length | 105 |
| Max. P | 0.705324 |
| Location | 7,958,678 – 7,958,783 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.42 |
| Shannon entropy | 0.35512 |
| G+C content | 0.37336 |
| Mean single sequence MFE | -25.74 |
| Consensus MFE | -14.63 |
| Energy contribution | -14.64 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7958678 105 - 21146708 ----------CCGAUGGUGUGCGGGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACAGCUUAAUACGUUCAAUGACUUUUGGCGCCCGUCUUUCU---- ----------..(((((.((((.((((((.(((((.((....)))))))...))))))(((((.(.(((.(((((.....))))).))).).)))))....))))))))).....---- ( -28.70, z-score = -2.42, R) >droSim1.chr2R 6495853 105 - 19596830 ----------GCGAUGGUGUGCAGGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACAGCUUAAUACGUUCAAUGACUUUUGGCGCCCGUCUUUCU---- ----------..(((((.((((.((((((.(((((.((....)))))))...))))))(((((.(.(((.(((((.....))))).))).).)))))....))))))))).....---- ( -28.90, z-score = -2.71, R) >droSec1.super_1 5507990 105 - 14215200 ----------GCGAUGGUGUGCAGGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACAGCUUAAUACGUUCAAUGACUUUUGGCGCCCGUCUUUCU---- ----------..(((((.((((.((((((.(((((.((....)))))))...))))))(((((.(.(((.(((((.....))))).))).).)))))....))))))))).....---- ( -28.90, z-score = -2.71, R) >droYak2.chr2R 12145190 104 + 21139217 -----------CGAUGGUGUGCAGGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACAGCCUAAUACGUUCAAUGACUUUUGGCGCCCGUCUUUCU---- -----------.(((((.((((.((((((.(((((.((....)))))))...))))))(((((.(.(((.(((((.....))))).))).).)))))....))))))))).....---- ( -28.90, z-score = -2.85, R) >droEre2.scaffold_4845 4750396 104 + 22589142 -----------CGAUGGUGUGCAGGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACAGCUUAAUACGUUCAAUGACUUUUGGCGCCCGUCUUUCU---- -----------.(((((.((((.((((((.(((((.((....)))))))...))))))(((((.(.(((.(((((.....))))).))).).)))))....))))))))).....---- ( -28.90, z-score = -3.01, R) >droAna3.scaffold_13266 17215280 119 + 19884421 AUGUGUGUGUGUAUAUUUUUGUUGGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACAGCUUAAUACGUUCAAUGACUUUUGGCGCUCGCCACCCUUCAU ((((((..(((((.(((...(..((((((.(((((.((....)))))))...))))))..).....)))....)))).)...))))))...((((....((((....))))....)))) ( -23.90, z-score = -0.56, R) >dp4.chr3 11873864 104 + 19779522 ----------CUGCGAGCGUGC-GGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACUGCCUAAUACGUUCAAUGACUUUUGGCGAUCGCCGCCCC---- ----------..(((((((((.-((((((.(((((.((....)))))))...))))))(((((((......))))..)))...)))))))..........(((....)))))...---- ( -29.60, z-score = -2.56, R) >droPer1.super_4 5345775 104 + 7162766 ----------CUGCGAGCGUGC-GGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACUGCCUAAUACGUUCAAUGACUUUUGGCGAUCGCCGCCCC---- ----------..(((((((((.-((((((.(((((.((....)))))))...))))))(((((((......))))..)))...)))))))..........(((....)))))...---- ( -29.60, z-score = -2.56, R) >droGri2.scaffold_15245 16375962 96 + 18325388 -----------------UGUUAGCGAAAGCGAAACACAGAAAUGGUUUUUAACUUUCCAGUUAAUUAAUUUAUUGCCGCUUAAUACGUUCAAUGACUUUUGCCGUUUGCUUUA------ -----------------((((.((....))..))))...(((((((..((((((....)))))).....((((((.((.......))..)))))).....)))))))......------ ( -16.80, z-score = -0.37, R) >droVir3.scaffold_12875 12075237 97 + 20611582 ----------------GUGUGUGCUAAAGAAAAACACAAAAAUGGUUUUUAACUUUUCAGUUAAUUAAUUUAUU---AAUUUACACGUUCAAUGACUUUUGGCGUUUGCUUCCUUU--- ----------------(((..((((((((((((((.((....)))))))).........((.((((((....))---)))).))............))))))))..))).......--- ( -13.20, z-score = 0.34, R) >consensus ___________CGAUGGUGUGCAGGAAAGCAAAACACAGAAAUGGUUUUUAACUUUCCGGUUAAUUAAUUUAUUACAGCUUAAUACGUUCAAUGACUUUUGGCGCCCGCCUUUCU____ .......................((((((.(((((.((....)))))))...))))))(((((.(.(((.(((((.....))))).))).).)))))...(((....)))......... (-14.63 = -14.64 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:52 2011