| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,956,344 – 7,956,446 |
| Length | 102 |
| Max. P | 0.900664 |
| Location | 7,956,344 – 7,956,446 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 85.99 |
| Shannon entropy | 0.23556 |
| G+C content | 0.48251 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -23.30 |
| Energy contribution | -25.86 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.900664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7956344 102 + 21146708 CAUUUUAAAAAUCCGCCCACUGAAUGGAUUUUAUGCUGCUGUGUUGGCCAUUCGAGAUGGCCAUUCACCCAGUUUCAACAUUUGUUCACUUCUGGCGGGUGG ..........(((((((...((((..(((.((..((((..(((.((((((((...))))))))..))).))))...)).)))..)))).....))))))).. ( -35.50, z-score = -3.33, R) >droEre2.scaffold_4845 4748146 87 - 22589142 CAUCAUCAAAAUCCCCCCACUGAAUGGAUUUCGUGC---------GGCU------GAUGGCCAUUCACCCAGUUCCAACAUUUGUUCACUUCUGGCGGGUCG ...............(((..(((((((...(((...---------...)------))...))))))).((((....(((....))).....)))).)))... ( -19.30, z-score = 0.41, R) >droYak2.chr2R 12142815 91 - 21139217 CAUCAUAAAAAACCUCCCACUGAAUGGAUUUCGUGCUGGU-----GGCU------GGUGGCCAUUCACCCAGUUUCAACAUUUGUUCACUUCUGGCGGGUCG ...........((((.(((.((((..(((.....((((((-----(((.------....)))).....)))))......)))..))))....))).)))).. ( -24.10, z-score = -0.55, R) >droSec1.super_1 5505708 100 + 14215200 CAUUAUAAAAAUCCGCCCACUGAAUGGAUUUUGUGCUGCUGU--UGGCCAUUCGAGAUGGCCAUUCACCCAGUUUCAAGAUUUGUUCACUUCUGGCGGGUGG ..........(((((((...((((..(((((((.((((.((.--((((((((...))))))))..))..))))..)))))))..)))).....))))))).. ( -38.90, z-score = -4.13, R) >droSim1.chr2R 6493592 100 + 19596830 CAUUAUAAAAAUCCGCCCACUGAAUGGAUUUUGUGCUGCUGU--UGGCCAUUCGAGAUGGCCAUUCACCCAGUUUCAACAUUUGUUCACUUCUGGCGGGUGG ..........(((((((...((((..(((.(((.((((.((.--((((((((...))))))))..))..))))..))).)))..)))).....))))))).. ( -35.30, z-score = -3.19, R) >consensus CAUUAUAAAAAUCCGCCCACUGAAUGGAUUUUGUGCUGCUGU__UGGCCAUUCGAGAUGGCCAUUCACCCAGUUUCAACAUUUGUUCACUUCUGGCGGGUGG ..........(((((((...((((..(((.(((.((((......(((((((.....)))))))......))))..))).)))..)))).....))))))).. (-23.30 = -25.86 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:50 2011