| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,950,833 – 7,950,924 |
| Length | 91 |
| Max. P | 0.908542 |
| Location | 7,950,833 – 7,950,924 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 86.79 |
| Shannon entropy | 0.22059 |
| G+C content | 0.45202 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -19.64 |
| Energy contribution | -19.36 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7950833 91 + 21146708 UAUUGUUUCCAUGUUAAAGUUCCGUCUGCAAUG-UGCCUGAAAUGUUCUCGGGAAUCCCUGCCAGGCGUCGAAGUUUGAAUGGAAAUGAGAU ..(..(((((((.(((((.(((((((((((..(-..(((((.......)))))...)..)).))))))..))).))))))))))))..)... ( -29.60, z-score = -3.73, R) >droSim1.chr2R 6487828 80 + 19596830 UUUUGUUUCCAUGUUAAAGUUCCGGCUGCAAUG-UGC-----------UCGGCAAUCCCUGCCAGGCGUCGAAGUUUGAAUGGAAAUGAGAU (((..(((((((.(((((.(((.(((.((...)-)((-----------..((((.....))))..)))))))).))))))))))))..))). ( -26.70, z-score = -2.66, R) >droSec1.super_1 5500149 80 + 14215200 UUUUGUUUCCAUGUUAAAGUUCCGGCUGCAAUG-UGC-----------UCGGGAAUCCCUGCCAGGCGUUGAAGUUUGAAUGGAAAUGAGAU (((..(((((((.(((((.(((.(((.((..((-.((-----------..(((...))).)))).)))))))).))))))))))))..))). ( -24.40, z-score = -2.01, R) >droYak2.chr2R 12137417 87 - 21139217 -UUUAUUUCCAUGUUAAAGUUCCGGCUGCUAUCCUGUU----AUGUGCUCGGGAAUCCCUGCCAGGCGUCGAAGUUUGAAUGGAAAUGAGAU -(((((((((((.(((((.(((((.((((..(((((..----.......)))))......).))).))..))).)))))))))))))))).. ( -25.40, z-score = -1.90, R) >droEre2.scaffold_4845 4743020 87 - 22589142 -UUUGUUUUCAUGUUAAAGUUCCGGCUGCAAUCCUGC----AAUGUGCUCGGGAAUCCCUGCCAGGCGUCGAAGUUUGAAUGGAAAUGAGUU -((..(((((((.(((((.(((.(((((((....)))----)....(((((((....))))...))))))))).))))))))))))..)).. ( -24.50, z-score = -1.15, R) >consensus UUUUGUUUCCAUGUUAAAGUUCCGGCUGCAAUG_UGC_____AUGU_CUCGGGAAUCCCUGCCAGGCGUCGAAGUUUGAAUGGAAAUGAGAU ..((((((((((.(((((.(((((.((((......))............((((....))))..)).))..))).)))))))))))))))... (-19.64 = -19.36 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:16:47 2011